RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 MPPED1O15442 326 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 CCNKO75909 580 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 DUS4LO95620 317 aaKnown RBP10.4□□□□□ -0.74
CCDC42-202ENST00000539522 HLA-AP01891 365 aaKnown RBP10.4□□□□□ -0.74
CCDC42-202ENST00000539522 RNASE1P07998 156 aaKnown RBP10.4□□□□□ -0.74
CCDC42-202ENST00000539522 VAMP1P23763 118 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 RELBQ01201 579 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 LY6EQ16553 131 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 KRTAP24-1Q3LI83 254 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 AKAP14Q86UN6 197 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 BVESQ8NE79 360 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 OR52B4Q8NGK2 314 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 ZNF418Q8TF45 676 aaPredicted RBP10.4□□□□□ -0.74
CCDC42-202ENST00000539522 MITD1Q8WV92 249 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 SSMEM1Q8WWF3 244 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 ZDHHC16Q969W1 377 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 PHB2Q99623 299 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 TCF19Q9Y242 345 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 ATRQ13535 2644 aa10.4□□□□□ -0.74
CCDC42-202ENST00000539522 OOSP1A8MZH6 123 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 IFNA2P01563 188 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 SULT1A3P0DMM9 295 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 SULT1A4P0DMN0 295 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 ANXA3P12429 323 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 IL3RAP26951 378 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 BRWD1-AS2P59051 145 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 EBI3Q14213 229 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 FCN2Q15485 313 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 PHLDA2Q53GA4 152 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 TMEM219Q86XT9 240 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 TMEM86BQ8N661 226 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 Q8N6K4 173 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 ZNF383Q8NA42 475 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 DRAXINQ8NBI3 349 aaPredicted RBP10.39□□□□□ -0.75
CCDC42-202ENST00000539522 UXS1Q8NBZ7 420 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 COQ8AQ8NI60 647 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 RPEQ96AT9 228 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 GALNT14Q96FL9 552 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 GPHA2Q96T91 129 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 OR2D2Q9H210 308 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 NAA60Q9H7X0 242 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 SLC2A9Q9NRM0 540 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 PIPOXQ9P0Z9 390 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 VPREB3Q9UKI3 123 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 GAB2Q9UQC2 676 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 POMT1Q9Y6A1 747 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 DNHD1Q96M86 4753 aa10.39□□□□□ -0.75
CCDC42-202ENST00000539522 LINC00473A8K010 186 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 RAB29O14966 203 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 GPR137BO60478 399 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 PGLYRP1O75594 196 aaPredicted RBP10.38□□□□□ -0.75
CCDC42-202ENST00000539522 B3GALNT1O75752 331 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 GAPDHP04406 335 aaKnown RBP10.38□□□□□ -0.75
CCDC42-202ENST00000539522 AMY1AP04745 511 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 SNRNP70P08621 437 aaKnown RBP10.38□□□□□ -0.75
CCDC42-202ENST00000539522 CEACAM3P40198 252 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 RPL30P62888 115 aaKnown RBP10.38□□□□□ -0.75
CCDC42-202ENST00000539522 SUPT4H1P63272 117 aaKnown RBP10.38□□□□□ -0.75
CCDC42-202ENST00000539522 SCGB2A2Q13296 93 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 FAM71F2Q6NXP2 309 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 ZNF818PQ6ZRF7 136 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 Q6ZS46 218 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 TGIF2LXQ8IUE1 241 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 OR8H3Q8N146 312 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.38□□□□□ -0.75
CCDC42-202ENST00000539522 CASTOR1Q8WTX7 329 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 DDB2Q92466 427 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 PLSCR3Q9NRY6 295 aa10.38□□□□□ -0.75
CCDC42-202ENST00000539522 ANK2Q01484 3957 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 PIGBOS1A0A0B4J2F0 54 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 C3orf85A0A1B0GTC6 90 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 FAM181BA6NEQ2 426 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 HLA-GP17693 338 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 GPR12P47775 334 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 LIN54Q6MZP7 749 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 ZNF645Q8N7E2 425 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.37□□□□□ -0.75
CCDC42-202ENST00000539522 OR11H7Q8NGC8 314 aa10.37□□□□□ -0.75
CCDC42-202ENST00000539522 RNF212BA8MTL3 300 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 H0YJW9 148 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 TXNL1O43396 289 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 IGKV1D-33P01593 117 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 IGKV1-33P01594 117 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 CNTFRP26992 372 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 DUTP33316 252 aaKnown RBP10.36□□□□□ -0.75
CCDC42-202ENST00000539522 RIPPLY3P57055 190 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 TMEM187Q14656 261 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 RBMS3Q6XE24 437 aaKnown RBP10.36□□□□□ -0.75
CCDC42-202ENST00000539522 MOB3BQ86TA1 216 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 TBC1D26Q86UD7 250 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 THNSL2Q86YJ6 484 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 OR5AN1Q8NGI8 311 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 OR5R1Q8NH85 324 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 ASB13Q8WXK3 278 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 EAF1Q96JC9 268 aaPredicted RBP10.36□□□□□ -0.75
CCDC42-202ENST00000539522 ST6GAL2Q96JF0 529 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 S1PR3Q99500 378 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 ZNF436Q9C0F3 470 aaPredicted RBP10.36□□□□□ -0.75
CCDC42-202ENST00000539522 C1RLQ9NZP8 487 aa10.36□□□□□ -0.75
CCDC42-202ENST00000539522 MGAT4CQ9UBM8 478 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms