RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 WFDC8Q8IUA0 241 aa11.83□□□□□ -0.51
LIG1-203ENST00000536218 MBD3L1Q8WWY6 194 aa11.83□□□□□ -0.51
LIG1-203ENST00000536218 CLUHP3Q96NS8 147 aa11.83□□□□□ -0.51
LIG1-203ENST00000536218 CFAP47Q6ZTR5 3102 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 SYNGR4O95473 234 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 OTX1P32242 354 aaPredicted RBP11.83□□□□□ -0.52
LIG1-203ENST00000536218 MEOX1P50221 254 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 AGMATQ9BSE5 352 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 DECR2Q9NUI1 292 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 ST3GAL6Q9Y274 331 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 DTYMKP23919 212 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 LINC00310P59036 64 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 ARF1P84077 181 aaKnown RBP11.83□□□□□ -0.52
LIG1-203ENST00000536218 OR4A47Q6IF82 309 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 PRR27Q6MZM9 219 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 CENPVQ7Z7K6 275 aaPredicted RBP11.83□□□□□ -0.52
LIG1-203ENST00000536218 OR2H1Q9GZK4 316 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 SLC35D1Q9NTN3 355 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 CLN8Q9UBY8 286 aa11.83□□□□□ -0.52
LIG1-203ENST00000536218 PGPEP1LA6NFU8 196 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 IAPPP10997 89 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 CD46P15529 392 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 CRYGSP22914 178 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 CLDN18P56856 261 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 IZUMO4Q1ZYL8 232 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 CACNA1GO43497 2377 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 CRIP3Q6Q6R5 217 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 TBC1D26Q86UD7 250 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 FER1L6-AS2Q96M78 137 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 TMEM222Q9H0R3 208 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 C12orf49Q9H741 205 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 KIAA1549Q9HCM3 1950 aa11.82□□□□□ -0.52
LIG1-203ENST00000536218 CLEC18AA5D8T8 446 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 FOXI3A8MTJ6 420 aaPredicted RBP11.81□□□□□ -0.52
LIG1-203ENST00000536218 SP1P08047 785 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 SPINK2P20155 84 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 TSPOP30536 169 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 AMTP48728 403 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 ARG2P78540 354 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 CLEC18CQ8NCF0 446 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 PP6455Q8WZ26 134 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 PIGCQ92535 297 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 TRAV30A0A087WSZ9 112 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 ODAMA1E959 279 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 IGLV3-1P01715 115 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 C1QTNF9P0C862 333 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 CDC34P49427 236 aaPredicted RBP11.81□□□□□ -0.52
LIG1-203ENST00000536218 MEGF9Q9H1U4 602 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 TBL2Q9Y4P3 447 aaKnown RBP11.81□□□□□ -0.52
LIG1-203ENST00000536218 NKX2-8O15522 239 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 PAGE4O60829 102 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 CRYAAP02489 173 aa11.81□□□□□ -0.52
LIG1-203ENST00000536218 SELENOHQ8IZQ5 122 aaKnown RBP11.81□□□□□ -0.52
LIG1-203ENST00000536218 RP1L1Q8IWN7 2480 aaPredicted RBP11.81□□□□□ -0.52
LIG1-203ENST00000536218 ZNF816-ZNF321PA0A0X1KG74 233 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 TMEM238LA0A1B0GVL6 79 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 WDR1O75083 606 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 CTRLP40313 264 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 CCL11P51671 97 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 PMP22Q01453 160 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 HIPK2Q9H2X6 1198 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 K7ERU9 68 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 PAX9P55771 341 aa11.8□□□□□ -0.52
LIG1-203ENST00000536218 RNF212BA8MTL3 300 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 KIAA1324LA8MWY0 1029 aaPredicted RBP11.79□□□□□ -0.52
LIG1-203ENST00000536218 TMEM250H0YL14 139 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 GOSR1O95249 250 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 SRPXP78539 464 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 MRPL49Q13405 166 aaKnown RBP11.79□□□□□ -0.52
LIG1-203ENST00000536218 KLHDC1Q8N7A1 406 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 SSC4DQ8WTU2 575 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 BORCS8Q96FH0 119 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 MRPL18Q9H0U6 180 aaKnown RBP11.79□□□□□ -0.52
LIG1-203ENST00000536218 SELENOKQ9Y6D0 94 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 OR6C6A6NF89 314 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 KLRC4-KLRK1H3BQV0 150 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 NRASP01111 189 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 PCBD1P61457 104 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 ID3Q02535 119 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 TMEM108Q6UXF1 575 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 RPP25LQ8N5L8 163 aaKnown RBP11.79□□□□□ -0.52
LIG1-203ENST00000536218 TCTEX1D1Q8N7M0 179 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 NRN1Q9NPD7 142 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 ELOVL5Q9NYP7 299 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 SH3BGRL2Q9UJC5 107 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 IGKV1-27A0A075B6S5 117 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 FCN1O00602 326 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 THBS3P49746 956 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 RNFT1Q5M7Z0 435 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 LHFPL4Q7Z7J7 247 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 OR10V1Q8NGI7 309 aa11.79□□□□□ -0.52
LIG1-203ENST00000536218 PINX1Q96BK5 328 aaKnown RBP11.79□□□□□ -0.52
LIG1-203ENST00000536218 ERRFI1Q9UJM3 462 aaPredicted RBP11.79□□□□□ -0.52
LIG1-203ENST00000536218 KLF13Q9Y2Y9 288 aaPredicted RBP11.79□□□□□ -0.52
LIG1-203ENST00000536218 LAMA5O15230 3695 aa11.78□□□□□ -0.52
LIG1-203ENST00000536218 ZFHX4Q86UP3 3567 aa11.78□□□□□ -0.52
LIG1-203ENST00000536218 UBE2L5PA0A1B0GUS4 154 aa11.78□□□□□ -0.52
LIG1-203ENST00000536218 C5orf49A4QMS7 147 aa11.78□□□□□ -0.52
LIG1-203ENST00000536218 MMP23AO75900 390 aa11.78□□□□□ -0.52
LIG1-203ENST00000536218 PPYP01298 95 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms