RNA–Protein interactions for RNA: ENST00000532504.5

PPFIA1-222, Transcript of PTPRF interacting protein alpha 1, human

TSL 1 (best)

Gene PPFIA1, Length 5,159 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA1-222	ENST00000532504	UBE2L3	P68036	154 aa	Known RBP	13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RPL7L1	Q6DKI1	246 aa	Known RBP	13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SCN8A	Q9UQD0	1980 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SVBP	Q8N300	66 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	MMP24	Q9Y5R2	645 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	GTF3C1	Q12789	2109 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504		A0A1W2PRX2	142 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	HGFAC	Q04756	655 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TMEM30B	Q3MIR4	351 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SLX1A	Q9BQ83	275 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RNF223	E7ERA6	249 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	C1QL1	O75973	258 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	GRN	P28799	593 aa	Known RBP	13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	P2RY4	P51582	365 aa		13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RBM14	Q96PK6	669 aa	Known RBP	13.19	□□□□□ -0.3
PPFIA1-222	ENST00000532504	CCL1	P22362	96 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	PAFAH1B2	P68402	229 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	DNM1P46	Q6ZS02	220 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TM2D1	Q9BX74	207 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	GHITM	Q9H3K2	345 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TRIM77	I1YAP6	450 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	IGFBP3	P17936	291 aa	Predicted RBP	13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RPS10	P46783	165 aa	Known RBP	13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RAB5B	P61020	215 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SMIM7	Q9BQ49	75 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	MRPL20	Q9BYC9	149 aa	Known RBP	13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	C19orf12	Q9NSK7	152 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	MAP1LC3B2	A6NCE7	125 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TMEM178B	H3BS89	294 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	IGKV3-15	P01624	115 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	MAP1LC3B	Q9GZQ8	125 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	PATZ1	Q9HBE1	687 aa	Known RBP	13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	PNRC2	Q9NPJ4	139 aa	Known RBP	13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	P2RY1	P47900	373 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	HIST3H3	Q16695	136 aa		13.18	□□□□□ -0.3
PPFIA1-222	ENST00000532504	ACAA1	P09110	424 aa	Predicted RBP	13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TPPP2	P59282	170 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	NXF2	Q9GZY0	626 aa	Known RBP	13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SERTM2	A0A1B0GWG4	89 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	PCP4L1	A6NKN8	68 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	UMAD1	C9J7I0	102 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SPCS3	P61009	180 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	C11orf44	Q8N8P7	122 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	OR4A5	Q8NH83	315 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	GPR146	Q96CH1	333 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504		S4R3C0	116 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	KCNAB3	O43448	404 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SULT1A1	P50225	295 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	CXorf66	Q5JRM2	361 aa	Predicted RBP	13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	ZFP82	Q8N141	532 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	MRPL30	Q8TCC3	161 aa	Known RBP	13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	CEACAM4	O75871	244 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	MT-ND4L	P03901	98 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RAB5C	P51148	216 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	EWSR1	Q01844	656 aa	Known RBP eCLIP	13.17	□□□□□ -0.3	1e-6	■■□□□ 12.5
PPFIA1-222	ENST00000532504	OR4P4	Q8NGL7	312 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	BSCL2	Q96G97	398 aa	Predicted RBP	13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	ATP5S	Q99766	215 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	QTRT1	Q9BXR0	403 aa	Known RBP	13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SPRY4	Q9C004	299 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	PLXND1	Q9Y4D7	1925 aa		13.17	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TRAV24	A0A0B4J272	114 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SRRM5	B3KS81	715 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	B2M	P61769	119 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TEPP	Q6URK8	271 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RBPMS2	Q6ZRY4	209 aa	Known RBP	13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TCTE3	Q8IZS6	198 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	NECAP1	Q8NC96	275 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	GAR1	Q9NY12	217 aa	Known RBP	13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	CENPF	P49454	3210 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	IGKV1-12	A0A0C4DH73	117 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SIGLEC5	O15389	551 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	IGKV1D-12	P01611	117 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504		Q5PR19	223 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	COLCA1	Q6ZS62	124 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	KBTBD11	O94819	623 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	C16orf82	Q7Z2V1	217 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	CABLES2	Q9BTV7	478 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TMEM133	Q9H2Q1	129 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504		B4DSR2	109 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	C10orf113	Q5VZT2	155 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	SLC35E3	Q7Z769	313 aa		13.16	□□□□□ -0.3
PPFIA1-222	ENST00000532504	NPIPB11	E5RHQ5	1161 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RND2	P52198	227 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	HSPE1	P61604	102 aa	Known RBP	13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	ATP5G2	Q06055	141 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	BRD3OS	Q6XYD6	125 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RTN4RL2	Q86UN3	420 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	C1orf196	B1AJZ1	125 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504		J3QRE1	110 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	ALX3	O95076	343 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	EGR1	P18146	543 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	MIDN	Q504T8	468 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TCTEX1D1	Q8N7M0	179 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	C5orf66	Q9H5L9	145 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	ETV2	O00321	342 aa	Predicted RBP	13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	TRGV3	P03979	118 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	WDR25	Q64LD2	544 aa	Predicted RBP	13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	FAM166A	Q6J272	317 aa		13.15	□□□□□ -0.3
PPFIA1-222	ENST00000532504	RBKS	Q9H477	322 aa		13.15	□□□□□ -0.3

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