RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 BDP1A6H8Y1 2624 aa11.95□□□□□ -0.5
USP48-213ENST00000529637 CEP250Q9BV73 2442 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 RHBDL1O75783 438 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 CRYABP02511 175 aaKnown RBP11.94□□□□□ -0.5
USP48-213ENST00000529637 ARR3P36575 388 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 SOX8P57073 446 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 PPP1CBP62140 327 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 GNB1P62873 340 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 TFF3Q07654 80 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 ZNF585BQ52M93 769 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 FAM58AQ8N1B3 248 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 RNASE8Q8TDE3 154 aaKnown RBP11.94□□□□□ -0.5
USP48-213ENST00000529637 TMEM204Q9BSN7 226 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 USF3Q68DE3 2245 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 IGKV3D-15A0A087WSY6 115 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 C11orf94C9JXX5 98 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 DEGS1O15121 323 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 SERF1AO75920 110 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 CBLN1P23435 193 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 COL8A2P25067 703 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 ATP5G3P48201 142 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 MEOX1P50221 254 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 LCN2P80188 198 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 Q6ZS49 121 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 NEIL1Q96FI4 390 aaPredicted RBP11.94□□□□□ -0.5
USP48-213ENST00000529637 OR2W1Q9Y3N9 320 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 CACNA1HO95180 2353 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 MLNRO43193 412 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 NDUFB4O95168 129 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 CLDN1O95832 211 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 COMPP49747 757 aaPredicted RBP11.94□□□□□ -0.5
USP48-213ENST00000529637 RAB7AP51149 207 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 GCSAMLQ5JQS6 135 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 OR5A2Q8NGI9 324 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 OR1L1Q8NH94 360 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 ZPBPQ9BS86 351 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 LINC00470Q9BZP3 86 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 ASCL3Q9NQ33 180 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 ELOVL5Q9NYP7 299 aa11.94□□□□□ -0.5
USP48-213ENST00000529637 CTXND1A0A1B0GTU2 59 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 GNG3P63215 75 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 FFAR4Q5NUL3 377 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 FBXW9Q5XUX1 488 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 POM121L2Q96KW2 1035 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 TTC28Q96AY4 2481 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 TRBV20OR9-2A0A075B6H5 130 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 CTXN2P0C2S0 81 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 DHRS13Q6UX07 377 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 VAMP8Q9BV40 100 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 TRAPPC2LQ9UL33 140 aa11.93□□□□□ -0.5
USP48-213ENST00000529637 GTF3C1Q12789 2109 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A10PA6NDY2 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A18PA6NE21 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A16PA6NEW6 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A20PA6NIJ5 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A8PA6NJQ4 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A7PA6NKC0 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A22PA8MWA6 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A12PA8MX19 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A5PA8MXJ8 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A23PA8MXZ1 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A15PP0C7V4 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A13PP0C7W8 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A14PP0C7W9 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM90A24PP0C7X0 464 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 THBS3P49746 956 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 ATP1A1-AS1Q5TC04 95 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 PEAR1Q5VY43 1037 aaPredicted RBP11.92□□□□□ -0.5
USP48-213ENST00000529637 STPG4Q8N801 248 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 ZDHHC11Q9H8X9 412 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 LNP1A1A4G5 178 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 WDR1O75083 606 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 CHRNB4P30926 498 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 NRN1LQ496H8 165 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 DEFB123Q8N688 67 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 ICE1Q9Y2F5 2266 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 NDUFB8O95169 186 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 SLC25A6P12236 298 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 MDP1Q86V88 176 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 FAM103A1Q9BTL3 118 aaKnown RBP11.92□□□□□ -0.5
USP48-213ENST00000529637 TMEM9BQ9NQ34 198 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 CLN8Q9UBY8 286 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 ZFP30Q9Y2G7 519 aa11.92□□□□□ -0.5
USP48-213ENST00000529637 VENTXO95231 258 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 MT-CO3P00414 261 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 GUCD1Q96NT3 240 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 RYDENQ9NUL5 291 aaKnown RBP11.91□□□□□ -0.5
USP48-213ENST00000529637 DLL3Q9NYJ7 618 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 TRAV24A0A0B4J272 114 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 GRPP07492 148 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 UBE2NP61088 152 aaKnown RBP11.91□□□□□ -0.5
USP48-213ENST00000529637 TMEM183BQ1AE95 376 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 SPINK9Q5DT21 86 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 TMEM14EPQ6UXP3 125 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 SAXO1Q8IYX7 474 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 GCNT2Q8N0V5 402 aa11.91□□□□□ -0.5
USP48-213ENST00000529637 PCNX2A6NKB5 2137 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 TRAV38-1A0A0B4J264 116 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 KLRC4-KLRK1H3BQV0 150 aa11.9□□□□□ -0.5
USP48-213ENST00000529637 SH2D1BO14796 132 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms