RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 IGSF11Q5DX21 431 aa17.82■□□□□ 0.44
CPSF1-202ENST00000527827 TMEM91Q6ZNR0 172 aa17.82■□□□□ 0.44
CPSF1-202ENST00000527827 TMEM203Q969S6 136 aa17.82■□□□□ 0.44
CPSF1-202ENST00000527827 PHB2Q99623 299 aa17.82■□□□□ 0.44
CPSF1-202ENST00000527827 NEURL2Q9BR09 285 aa17.82■□□□□ 0.44
CPSF1-202ENST00000527827 CABLES2Q9BTV7 478 aa17.82■□□□□ 0.44
CPSF1-202ENST00000527827 PEMTQ9UBM1 199 aa17.82■□□□□ 0.44
CPSF1-202ENST00000527827 ALMS1Q8TCU4 4167 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 ZNF785A8K8V0 405 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 BET1O15155 118 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 OR9G9P0C7N8 305 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 CLDN12P56749 244 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 TAGLNQ01995 201 aaKnown RBP17.81■□□□□ 0.44
CPSF1-202ENST00000527827 RAB11BQ15907 218 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 AKIP1Q9NQ31 210 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 ZNF230Q9UIE0 474 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-202ENST00000527827 KCNK7Q9Y2U2 307 aa17.81■□□□□ 0.44
CPSF1-202ENST00000527827 A0A0B4J203 849 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 RBMY1BA6NDE4 496 aaKnown RBP17.8■□□□□ 0.44
CPSF1-202ENST00000527827 RBMY1EA6NEQ0 496 aaKnown RBP17.8■□□□□ 0.44
CPSF1-202ENST00000527827 AIREO43918 545 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 PRH1P02810 166 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 CD7P09564 240 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 RBMY1DP0C7P1 496 aaKnown RBP17.8■□□□□ 0.44
CPSF1-202ENST00000527827 RHOGP84095 191 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 ZNF45Q02386 682 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 PLA2G7Q13093 441 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 CBX3Q13185 183 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 MED22Q15528 200 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 TNXAQ16473 311 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 PRSS8Q16651 343 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 RTL8BQ17RB0 113 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 LIPKQ5VXJ0 399 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 LAX1Q8IWV1 398 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 TEX45Q8NA69 505 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 OR56B1Q8NGI3 324 aa17.8■□□□□ 0.44
CPSF1-202ENST00000527827 SRSF12Q8WXF0 261 aaKnown RBP17.8■□□□□ 0.44
CPSF1-202ENST00000527827 TRBV6-7A0A0A0MS04 114 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 TRBV9A0A0B4J1U6 114 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 PTGES3LE9PB15 166 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 TPPPO94811 219 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 GSTT2P0CG29 244 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 GSTT2BP0CG30 244 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 UBE2KP61086 200 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 EXOSC2Q13868 293 aaKnown RBP17.79■□□□□ 0.44
CPSF1-202ENST00000527827 C2orf76Q3KRA6 126 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 DEFB125Q8N687 156 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 OR10J5Q8NHC4 309 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 DDB2Q92466 427 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 FAM3DQ96BQ1 224 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 WFDC10AQ9H1F0 79 aa17.79■□□□□ 0.44
CPSF1-202ENST00000527827 FAM223BA6NKX1 122 aa17.78■□□□□ 0.44
CPSF1-202ENST00000527827 FCGR3AP08637 254 aa17.78■□□□□ 0.44
CPSF1-202ENST00000527827 RRASP10301 218 aa17.78■□□□□ 0.44
CPSF1-202ENST00000527827 VMA21Q3ZAQ7 101 aa17.78■□□□□ 0.44
CPSF1-202ENST00000527827 IDO2Q6ZQW0 420 aa17.78■□□□□ 0.44
CPSF1-202ENST00000527827 FAM223AQ8IWN6 122 aa17.78■□□□□ 0.44
CPSF1-202ENST00000527827 UFD1Q92890 307 aa17.78■□□□□ 0.44
CPSF1-202ENST00000527827 DENRO43583 198 aaKnown RBP17.77■□□□□ 0.44
CPSF1-202ENST00000527827 RPS25P62851 125 aaKnown RBP17.77■□□□□ 0.44
CPSF1-202ENST00000527827 ATP5G2Q06055 141 aa17.77■□□□□ 0.44
CPSF1-202ENST00000527827 IRF3Q14653 427 aa17.77■□□□□ 0.44
CPSF1-202ENST00000527827 SLC2A8Q9NY64 477 aa17.77■□□□□ 0.44
CPSF1-202ENST00000527827 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.76■□□□□ 0.43
CPSF1-202ENST00000527827 TMEM272A0A1B0GTI8 110 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 LINC00473A8K010 186 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 MPPED1O15442 326 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 DIRAS3O95661 229 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 CRYZL1O95825 349 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 EDN2P20800 178 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 DUTP33316 252 aaKnown RBP17.76■□□□□ 0.43
CPSF1-202ENST00000527827 TPBGQ13641 420 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 RCN1Q15293 331 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 DEFB114Q30KQ6 69 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 OGFRL1Q5TC84 451 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-202ENST00000527827 ACOT12Q8WYK0 555 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 MAFIPQ8WZ33 124 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 SRD5A3Q9H8P0 318 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 DMRT1Q9Y5R6 373 aa17.76■□□□□ 0.43
CPSF1-202ENST00000527827 MRPS15P82914 257 aaKnown RBP17.75■□□□□ 0.43
CPSF1-202ENST00000527827 RAB3CQ96E17 227 aa17.75■□□□□ 0.43
CPSF1-202ENST00000527827 ADTRPQ96IZ2 230 aa17.75■□□□□ 0.43
CPSF1-202ENST00000527827 ZNF430Q9H8G1 570 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-202ENST00000527827 ZC4H2Q9NQZ6 224 aa17.75■□□□□ 0.43
CPSF1-202ENST00000527827 OR11H12B2RN74 326 aa17.74■□□□□ 0.43
CPSF1-202ENST00000527827 TUSC2O75896 110 aa17.74■□□□□ 0.43
CPSF1-202ENST00000527827 ARL6IP5O75915 188 aa17.74■□□□□ 0.43
CPSF1-202ENST00000527827 TTC9CQ8N5M4 171 aa17.74■□□□□ 0.43
CPSF1-202ENST00000527827 OSR1Q8TAX0 266 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-202ENST00000527827 DYNLRB2Q8TF09 96 aa17.74■□□□□ 0.43
CPSF1-202ENST00000527827 RAB22AQ9UL26 194 aa17.74■□□□□ 0.43
CPSF1-202ENST00000527827 RBM7Q9Y580 266 aaKnown RBP17.74■□□□□ 0.43
CPSF1-202ENST00000527827 C2orf70A6NJV1 201 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 PPP5D1E7EU14 171 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 EBAG9O00559 213 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 SAA1P0DJI8 122 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-202ENST00000527827 FOLR2P14207 255 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 KIR2DS2P43631 304 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 C10orf55Q5SWW7 151 aa17.73■□□□□ 0.43
CPSF1-202ENST00000527827 H1FOOQ8IZA3 346 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms