RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 FXYD3Q14802 87 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 DEFB136Q30KP8 78 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 VMA21Q3ZAQ7 101 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 HOGA1Q86XE5 327 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 S100A16Q96FQ6 103 aaKnown RBP16.05■□□□□ 0.16
VPS28-206ENST00000526734 DUX3Q96PT4 197 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 MRPS7Q9Y2R9 242 aaKnown RBP16.05■□□□□ 0.16
VPS28-206ENST00000526734 A3GALT2U3KPV4 340 aa16.05■□□□□ 0.16
VPS28-206ENST00000526734 H3BUA1 57 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 CREBL2O60519 120 aaPredicted RBP16.04■□□□□ 0.16
VPS28-206ENST00000526734 TUSC2O75896 110 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 CRYGBP07316 175 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 NFYAP23511 347 aaPredicted RBP16.04■□□□□ 0.16
VPS28-206ENST00000526734 RPS19P39019 145 aaKnown RBP16.04■□□□□ 0.16
VPS28-206ENST00000526734 ZNF616Q08AN1 781 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 MSMO1Q15800 293 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 UBE2NLQ5JXB2 153 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 TEX45Q8NA69 505 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 OR11H1Q8NG94 326 aa16.04■□□□□ 0.16
VPS28-206ENST00000526734 RBMX2Q9Y388 322 aaKnown RBP16.04■□□□□ 0.16
VPS28-206ENST00000526734 XRCC3O43542 346 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 SOX15O60248 233 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 CNIH1O95406 144 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 UBE2KP61086 200 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 DCTN2Q13561 401 aaKnown RBP16.03■□□□□ 0.16
VPS28-206ENST00000526734 C9orf66Q5T8R8 295 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 KCTD9Q7L273 389 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 OVCH2Q7RTZ1 564 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 LFNGQ8NES3 379 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 OR1N2Q8NGR9 330 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 HSD17B10Q99714 261 aaKnown RBP16.03■□□□□ 0.16
VPS28-206ENST00000526734 GNB4Q9HAV0 340 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 TPSG1Q9NRR2 321 aa16.03■□□□□ 0.16
VPS28-206ENST00000526734 PRKDCP78527 4128 aaKnown RBP16.02■□□□□ 0.16
VPS28-206ENST00000526734 LINC00473A8K010 186 aa16.02■□□□□ 0.16
VPS28-206ENST00000526734 ARPC1BO15143 372 aaKnown RBP16.02■□□□□ 0.16
VPS28-206ENST00000526734 CRYZL1O95825 349 aa16.02■□□□□ 0.16
VPS28-206ENST00000526734 GRPEL2Q8TAA5 225 aa16.02■□□□□ 0.16
VPS28-206ENST00000526734 SLC25A46Q96AG3 418 aa16.02■□□□□ 0.16
VPS28-206ENST00000526734 FAM103A1Q9BTL3 118 aaKnown RBP16.02■□□□□ 0.16
VPS28-206ENST00000526734 RAMP3O60896 148 aa16.01■□□□□ 0.15
VPS28-206ENST00000526734 LGALS1P09382 135 aaKnown RBP16.01■□□□□ 0.15
VPS28-206ENST00000526734 LSM3P62310 102 aaKnown RBP16.01■□□□□ 0.15
VPS28-206ENST00000526734 ZNF66Q6ZN08 573 aa16.01■□□□□ 0.15
VPS28-206ENST00000526734 OR13F1Q8NGS4 319 aa16.01■□□□□ 0.15
VPS28-206ENST00000526734 FUNDC2Q9BWH2 189 aa16.01■□□□□ 0.15
VPS28-206ENST00000526734 TGP01266 2768 aa16■□□□□ 0.15
VPS28-206ENST00000526734 BRI3O95415 125 aa16■□□□□ 0.15
VPS28-206ENST00000526734 HOXD3P31249 432 aaPredicted RBP16■□□□□ 0.15
VPS28-206ENST00000526734 TGFBR1P36897 503 aa16■□□□□ 0.15
VPS28-206ENST00000526734 INSL3P51460 131 aa16■□□□□ 0.15
VPS28-206ENST00000526734 GNB1P62873 340 aa16■□□□□ 0.15
VPS28-206ENST00000526734 DGCR2P98153 550 aa16■□□□□ 0.15
VPS28-206ENST00000526734 TMEM69Q5SWH9 247 aa16■□□□□ 0.15
VPS28-206ENST00000526734 SAMD12Q8N8I0 201 aa16■□□□□ 0.15
VPS28-206ENST00000526734 POC5Q8NA72 575 aa16■□□□□ 0.15
VPS28-206ENST00000526734 ZBTB34Q8NCN2 500 aa16■□□□□ 0.15
VPS28-206ENST00000526734 OR4S2Q8NH73 311 aa16■□□□□ 0.15
VPS28-206ENST00000526734 CMTM3Q96MX0 182 aa16■□□□□ 0.15
VPS28-206ENST00000526734 IGKV1D-13A0A0B4J2D9 117 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 SRRM4A7MD48 611 aaKnown RBP15.99■□□□□ 0.15
VPS28-206ENST00000526734 J3QRK9 145 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 IGKV1-13P0DP09 117 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 KIR2DS2P43631 304 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 TPPP2P59282 170 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 KRTAP10-11P60412 298 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 CDK10Q15131 360 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 PRSS8Q16651 343 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 GVQW1Q8N7I0 195 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 OR5AP2Q8NGF4 316 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 VSTM2AQ8TAG5 236 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 ACOT12Q8WYK0 555 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 BORCS5Q969J3 196 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 OR5B12Q96R08 314 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 IFT46Q9NQC8 304 aa15.99■□□□□ 0.15
VPS28-206ENST00000526734 A0A0G2JLM5 398 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 SEC14L6B5MCN3 397 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 LINC01619G3V211 115 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 K7EIL1 84 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 FCGR3BO75015 233 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 PPYP01298 95 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 IGLV2-14P01704 120 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 AADACP22760 399 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 FCGR2CP31995 323 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 SSBP2P81877 361 aaPredicted RBP15.98■□□□□ 0.15
VPS28-206ENST00000526734 PJVKQ0ZLH3 352 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 TCTEX1D2Q8WW35 142 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 DCUN1D5Q9BTE7 237 aa15.98■□□□□ 0.15
VPS28-206ENST00000526734 ACTL6BO94805 426 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 TRGV3P03979 118 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 TAS2R20P59543 309 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 EIF4EBP1Q13541 118 aaPredicted RBP15.97■□□□□ 0.15
VPS28-206ENST00000526734 ASPHD1Q5U4P2 390 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 MMD2Q8IY49 270 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 GIMAP1Q8WWP7 306 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 SNAPC3Q92966 411 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 RHOVQ96L33 236 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 ANAPC10Q9UM13 185 aa15.97■□□□□ 0.15
VPS28-206ENST00000526734 APOA1P02647 267 aa15.96■□□□□ 0.15
VPS28-206ENST00000526734 SAA1P0DJI8 122 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms