RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SOX15O60248 233 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 KBTBD11O94819 623 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 EGR1P18146 543 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 NDUFA6P56556 154 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 TFF3Q07654 80 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 HNF4GQ14541 408 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 FRYQ5TBA9 3013 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 CACNA1GO43497 2377 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 URB1O60287 2271 aaKnown RBP17.65■□□□□ 0.42
VPS28-205ENST00000526204 TRBV24-1A0A075B6N3 115 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 IGHV3-13P01766 116 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 LINC00205P59089 165 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 LTC4SQ16873 150 aa17.65■□□□□ 0.42
VPS28-205ENST00000526204 QTRT1Q9BXR0 403 aaKnown RBP17.65■□□□□ 0.42
VPS28-205ENST00000526204 GTF3C1Q12789 2109 aa17.64■□□□□ 0.42
VPS28-205ENST00000526204 FCGR3BO75015 233 aa17.64■□□□□ 0.41
VPS28-205ENST00000526204 SPCS3P61009 180 aa17.64■□□□□ 0.41
VPS28-205ENST00000526204 ACOT6Q3I5F7 207 aaPredicted RBP17.64■□□□□ 0.41
VPS28-205ENST00000526204 TIMM23BQ5SRD1 257 aa17.64■□□□□ 0.41
VPS28-205ENST00000526204 SEM1Q6ZVN7 128 aa17.64■□□□□ 0.41
VPS28-205ENST00000526204 RAB24Q969Q5 203 aa17.64■□□□□ 0.41
VPS28-205ENST00000526204 PARD6AQ9NPB6 346 aa17.64■□□□□ 0.41
VPS28-205ENST00000526204 C15orf62A8K5M9 175 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 F2RL2O00254 374 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BKO60814 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 PROP1O75360 226 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 TRGC2P03986 189 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BJP06899 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 FABP1P07148 127 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BOP23527 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BBP33778 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BDP58876 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BCP62807 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST2H2BEQ16778 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 C3orf36Q3SXR2 165 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.63■□□□□ 0.41
VPS28-205ENST00000526204 GCSAMQ8N6F7 178 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 OR52E5Q8NH55 327 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BHQ93079 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BNQ99877 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 HIST1H2BMQ99879 126 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 OR51M1Q9H341 326 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 OR6C3Q9NZP0 311 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 YIF1AO95070 293 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 OR9G9P0C7N8 305 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 ZNF83P51522 516 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 SPINK9Q5DT21 86 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 PRAMEF5Q5TYX0 476 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 OR4A16Q8NH70 328 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 DIRC2Q96SL1 478 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 NCOR1P1Q9H4R4 102 aa17.63■□□□□ 0.41
VPS28-205ENST00000526204 M0R1X1 148 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 HMGB3O15347 200 aaKnown RBP17.62■□□□□ 0.41
VPS28-205ENST00000526204 CRYAAP02489 173 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 CD1BP29016 333 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 KIR2DS2P43631 304 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 KLF3P57682 345 aaPredicted RBP17.62■□□□□ 0.41
VPS28-205ENST00000526204 ERVK-16P61578 105 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 LRP11Q86VZ4 500 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 S100PBPQ96BU1 408 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 OR2V2Q96R30 315 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 RAB9BQ9NP90 201 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 GSN-AS1Q9NRJ2 163 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 WDR83OSQ9Y284 106 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 S100PP25815 95 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 GLRXP35754 106 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 LOXL3P58215 753 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 NKX6-1P78426 367 aaPredicted RBP17.62■□□□□ 0.41
VPS28-205ENST00000526204 ADIRFQ15847 76 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 MSMPQ1L6U9 139 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 PDLIM3Q53GG5 364 aaPredicted RBP17.62■□□□□ 0.41
VPS28-205ENST00000526204 MEGF10Q96KG7 1140 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 GGACTQ9BVM4 153 aa17.62■□□□□ 0.41
VPS28-205ENST00000526204 SEC14L6B5MCN3 397 aa17.61■□□□□ 0.41
VPS28-205ENST00000526204 M0R1B8 84 aa17.61■□□□□ 0.41
VPS28-205ENST00000526204 MPDU1O75352 247 aa17.61■□□□□ 0.41
VPS28-205ENST00000526204 S100A2P29034 98 aa17.61■□□□□ 0.41
VPS28-205ENST00000526204 BSXQ3C1V8 233 aa17.61■□□□□ 0.41
VPS28-205ENST00000526204 GAR1Q9NY12 217 aaKnown RBP17.61■□□□□ 0.41
VPS28-205ENST00000526204 GAB2Q9UQC2 676 aa17.61■□□□□ 0.41
VPS28-205ENST00000526204 ELOA3CA0A087WX78 387 aaPredicted RBP17.6■□□□□ 0.41
VPS28-205ENST00000526204 SMCO3A2RU48 225 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 ITGB1BP1O14713 200 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 LHBP01229 141 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 RPS16P62249 146 aaKnown RBP17.6■□□□□ 0.41
VPS28-205ENST00000526204 IGFL3Q6UXB1 125 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 RPUSD4Q96CM3 377 aaKnown RBP17.6■□□□□ 0.41
VPS28-205ENST00000526204 S1PR3Q99500 378 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 USF3Q68DE3 2245 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 CDC34P49427 236 aaPredicted RBP17.6■□□□□ 0.41
VPS28-205ENST00000526204 RAB7AP51149 207 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 EDDM3BP56851 147 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 TMEM249Q2WGJ8 235 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 MOGAT3Q86VF5 341 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 ZNRF1Q8ND25 227 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 OR4F5Q8NH21 305 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 OR4F4Q96R69 305 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 PARLQ9H300 379 aa17.6■□□□□ 0.41
VPS28-205ENST00000526204 IGHV3OR15-7A0A075B7D8 119 aa17.59■□□□□ 0.41
VPS28-205ENST00000526204 IFNA10P01566 189 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms