RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 BLCAPP62952 87 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 MMDQ15546 238 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 MSMO1Q15800 293 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 RTL8BQ17RB0 113 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 ABCA11PQ4W5N1 156 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 RNASE10Q5GAN6 216 aaKnown RBP8.03□□□□□ -1.12
VPS28-204ENST00000526054 C9orf152Q5JTZ5 239 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 VAX1Q5SQQ9 334 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 Q6ZS46 218 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 TMEM17Q86X19 198 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 LYSMD2Q8IV50 215 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 C5orf56Q8N8D9 126 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 ZNF383Q8NA42 475 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 DRAXINQ8NBI3 349 aaPredicted RBP8.03□□□□□ -1.12
VPS28-204ENST00000526054 ZBTB34Q8NCN2 500 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 OR6F1Q8NGZ6 308 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 SECTM1Q8WVN6 248 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 MOB3AQ96BX8 217 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 HSD17B10Q99714 261 aaKnown RBP8.03□□□□□ -1.12
VPS28-204ENST00000526054 RASL11BQ9BPW5 248 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 ZNF2Q9BSG1 426 aaPredicted RBP8.03□□□□□ -1.12
VPS28-204ENST00000526054 SLC5A7Q9GZV3 580 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 SLC35D1Q9NTN3 355 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 TAS2R8Q9NYW2 309 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 KIAA1456Q9P272 454 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 KLK11Q9UBX7 282 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 ZNF107Q9UII5 783 aaPredicted RBP8.03□□□□□ -1.12
VPS28-204ENST00000526054 RBMX2Q9Y388 322 aaKnown RBP8.03□□□□□ -1.12
VPS28-204ENST00000526054 NBEAL2Q6ZNJ1 2754 aa8.03□□□□□ -1.12
VPS28-204ENST00000526054 NBR2O15453 112 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 PF4P02776 101 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 IFNA6P05013 189 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 RRASP10301 218 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 DUTP33316 252 aaKnown RBP8.02□□□□□ -1.13
VPS28-204ENST00000526054 ZNF660Q6AZW8 331 aaPredicted RBP8.02□□□□□ -1.13
VPS28-204ENST00000526054 DHRS11Q6UWP2 260 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 KCTD9Q7L273 389 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 TMEM229BQ8NBD8 167 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 OR5AU1Q8NGC0 362 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 FLYWCH2Q96CP2 140 aaKnown RBP8.02□□□□□ -1.13
VPS28-204ENST00000526054 C5orf30Q96GV9 206 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 TSNAXQ99598 290 aaKnown RBP8.02□□□□□ -1.13
VPS28-204ENST00000526054 SDHCQ99643 169 aaPredicted RBP8.02□□□□□ -1.13
VPS28-204ENST00000526054 RNF5Q99942 180 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 THAP7Q9BT49 309 aaPredicted RBP8.02□□□□□ -1.13
VPS28-204ENST00000526054 LIN7CQ9NUP9 197 aaKnown RBP8.02□□□□□ -1.13
VPS28-204ENST00000526054 PRELID3BQ9Y3B1 194 aa8.02□□□□□ -1.13
VPS28-204ENST00000526054 M0QYG6 137 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 SPDEFO95238 335 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 RAB3DO95716 219 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 CD3DP04234 171 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 AMY1AP04745 511 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 AMY2AP04746 511 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 IGLL1P15814 213 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 F2RL1P55085 397 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 DEFA1P59665 94 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 DEFA3P59666 94 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 RPS16P62249 146 aaKnown RBP8.01□□□□□ -1.13
VPS28-204ENST00000526054 CD83Q01151 205 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 CATR1Q13166 79 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 MEF2DQ14814 521 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 BAK1Q16611 211 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 KHDC1LQ5JSQ8 128 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 STEAP1BQ6NZ63 245 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 LPCAT3Q6P1A2 487 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 ZNF66Q6ZN08 573 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 ARRDC1Q8N5I2 433 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 Q8N9W7 124 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 BVESQ8NE79 360 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 OR4X2Q8NGF9 303 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 TCTEX1D2Q8WW35 142 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 FXYD6Q9H0Q3 95 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 CCL28Q9NRJ3 127 aa8.01□□□□□ -1.13
VPS28-204ENST00000526054 DNAH9Q9NYC9 4486 aa8□□□□□ -1.13
VPS28-204ENST00000526054 TCRBV4S1A1TA0A5B7 111 aa8□□□□□ -1.13
VPS28-204ENST00000526054 SH2D7A6NKC9 451 aaPredicted RBP8□□□□□ -1.13
VPS28-204ENST00000526054 LINC00473A8K010 186 aa8□□□□□ -1.13
VPS28-204ENST00000526054 NDUFA3O95167 84 aa8□□□□□ -1.13
VPS28-204ENST00000526054 IGLV2-14P01704 120 aa8□□□□□ -1.13
VPS28-204ENST00000526054 CD74P04233 296 aa8□□□□□ -1.13
VPS28-204ENST00000526054 IGKV1-16P04430 117 aa8□□□□□ -1.13
VPS28-204ENST00000526054 AKAIN1P0CW23 69 aa8□□□□□ -1.13
VPS28-204ENST00000526054 S100GP29377 79 aa8□□□□□ -1.13
VPS28-204ENST00000526054 KIR2DS2P43631 304 aa8□□□□□ -1.13
VPS28-204ENST00000526054 LINC00205P59089 165 aa8□□□□□ -1.13
VPS28-204ENST00000526054 AP3S2P59780 193 aa8□□□□□ -1.13
VPS28-204ENST00000526054 PLGLAQ15195 96 aa8□□□□□ -1.13
VPS28-204ENST00000526054 C5orf64Q2M2E5 130 aa8□□□□□ -1.13
VPS28-204ENST00000526054 ZNF57Q68EA5 555 aaPredicted RBP8□□□□□ -1.13
VPS28-204ENST00000526054 SLC35E3Q7Z769 313 aa8□□□□□ -1.13
VPS28-204ENST00000526054 CENPVQ7Z7K6 275 aaPredicted RBP8□□□□□ -1.13
VPS28-204ENST00000526054 FOXRED2Q8IWF2 684 aa8□□□□□ -1.13
VPS28-204ENST00000526054 CMTM1Q8IZ96 169 aa8□□□□□ -1.13
VPS28-204ENST00000526054 FAM71E2Q8N5Q1 922 aa8□□□□□ -1.13
VPS28-204ENST00000526054 NPBQ8NG41 125 aa8□□□□□ -1.13
VPS28-204ENST00000526054 OR4S2Q8NH73 311 aa8□□□□□ -1.13
VPS28-204ENST00000526054 DDB2Q92466 427 aa8□□□□□ -1.13
VPS28-204ENST00000526054 TRIM63Q969Q1 353 aa8□□□□□ -1.13
VPS28-204ENST00000526054 HARBI1Q96MB7 349 aa8□□□□□ -1.13
VPS28-204ENST00000526054 TINAGL1Q9GZM7 467 aaPredicted RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms