RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 A6NHS1 94 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 M0QYG6 137 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 AP4M1O00189 453 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 SHOXO15266 292 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 RAB3DO95716 219 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 CNTFRP26992 372 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 S100GP29377 79 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 CATR1Q13166 79 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 PLGLAQ15195 96 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 PSG5Q15238 335 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 PYDC2Q56P42 97 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 STEAP1BQ6NZ63 245 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 OR6Q1Q8NGQ2 317 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 CHPT1Q8WUD6 406 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 TCTEX1D2Q8WW35 142 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 HARBI1Q96MB7 349 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 BATF3Q9NR55 127 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 PLXNB1O43157 2135 aa11.29□□□□□ -0.6
NUP54-216ENST00000514901 GPR31O00270 319 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 FCGR3BO75015 233 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 CRYZL1O95825 349 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 RPL30P62888 115 aaKnown RBP11.28□□□□□ -0.6
NUP54-216ENST00000514901 TMEM95Q3KNT9 176 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 ZNF818PQ6ZRF7 136 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 OR4S2Q8NH73 311 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 CD300LFQ8TDQ1 290 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 WIPF2Q8TF74 440 aaPredicted RBP11.28□□□□□ -0.6
NUP54-216ENST00000514901 RBMXL1Q96E39 390 aaKnown RBP11.28□□□□□ -0.6
NUP54-216ENST00000514901 AIFM2Q9BRQ8 373 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 THAP7Q9BT49 309 aaPredicted RBP11.28□□□□□ -0.6
NUP54-216ENST00000514901 TINAGL1Q9GZM7 467 aaPredicted RBP11.28□□□□□ -0.6
NUP54-216ENST00000514901 FBXL15Q9H469 300 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 METTL1Q9UBP6 276 aaKnown RBP11.28□□□□□ -0.6
NUP54-216ENST00000514901 ZNF580Q9UK33 172 aa11.28□□□□□ -0.6
NUP54-216ENST00000514901 RBFOX2O43251 390 aaKnown RBP eCLIP11.27□□□□□ -0.61
NUP54-216ENST00000514901 TNFSF12O43508 249 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 IGF1P05019 195 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 AKAIN1P0CW23 69 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 KRTAP10-3P60369 221 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 SLC35B1P78383 322 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 VMA21Q3ZAQ7 101 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 SLC38A6Q8IZM9 456 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 Q8N402 240 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 TCTEX1D1Q8N7M0 179 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 TEX45Q8NA69 505 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 POC5Q8NA72 575 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 OR5AU1Q8NGC0 362 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 TERB2Q8NHR7 220 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 SGMS2Q8NHU3 365 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 RSRP1Q9BUV0 290 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 OR51J1Q9H342 316 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 V9GYH0 126 aa11.27□□□□□ -0.61
NUP54-216ENST00000514901 TNCP24821 2201 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 IGHV7-81A0A0B4J1V7 117 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 ANKRD20A5PA0PJZ0 165 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 PSMB11A5LHX3 300 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 LINC01548A6NM66 108 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 DISC1C4P0D8 188 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 SLC25A17O43808 307 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 FBXO24O75426 580 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 PGLYRP1O75594 196 aaPredicted RBP11.26□□□□□ -0.61
NUP54-216ENST00000514901 HRASP01112 189 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 IGLV2-23P01705 113 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 ECI1P42126 302 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 AP3S2P59780 193 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 UBE2KP61086 200 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 AADACL3Q5VUY0 350 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 ZNF562Q6V9R5 426 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 LINC00299Q6ZSB3 139 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 PPP1R27Q86WC6 154 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 LHFPL1Q86WI0 220 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 STPG2Q8N412 459 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 COMMD1Q8N668 190 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 DEDD2Q8WXF8 326 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 ZNF486Q96H40 463 aaPredicted RBP11.26□□□□□ -0.61
NUP54-216ENST00000514901 HSPB9Q9BQS6 159 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 FXYD6Q9H0Q3 95 aa11.26□□□□□ -0.61
NUP54-216ENST00000514901 SRRM4A7MD48 611 aaKnown RBP11.25□□□□□ -0.61
NUP54-216ENST00000514901 CREBL2O60519 120 aaPredicted RBP11.25□□□□□ -0.61
NUP54-216ENST00000514901 CRYGBP07316 175 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 VDAC1P21796 283 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 FAUP35544 74 aaKnown RBP11.25□□□□□ -0.61
NUP54-216ENST00000514901 CX3CL1P78423 397 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 SRSF4Q08170 494 aaKnown RBP11.25□□□□□ -0.61
NUP54-216ENST00000514901 SPAG16Q8N0X2 631 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 GDPD1Q8N9F7 314 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 OR4X2Q8NGF9 303 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 OR4D10Q8NGI6 311 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 ZFAND1Q8TCF1 268 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 NOL4LQ96MY1 436 aaPredicted RBP11.25□□□□□ -0.61
NUP54-216ENST00000514901 PRRT1Q99946 306 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 FAM212BQ9NTI7 297 aaPredicted RBP11.25□□□□□ -0.61
NUP54-216ENST00000514901 WNK1Q9H4A3 2382 aa11.25□□□□□ -0.61
NUP54-216ENST00000514901 M0QZ24 198 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 FCN1O00602 326 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 HPRT1P00492 218 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 OPN1MWP04001 364 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 ZNF735P0CB33 412 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 OPN1MW2P0DN77 364 aa11.24□□□□□ -0.61
NUP54-216ENST00000514901 OPN1MW3P0DN78 364 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms