RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KIR3DP1A8MWS1 328 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 IDSB3KWA1 339 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 K7EPK0 472 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SDHDO14521 159 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CHST1O43916 411 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BKO60814 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TRAPPC6AO75865 159 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR7C1O76099 320 aaPredicted RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR2A4O95047 310 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 IFNW1P05000 195 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ALDOBP05062 364 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CSN2P05814 226 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BJP06899 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SOD3P08294 240 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ERGP11308 486 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ATP1B2P14415 290 aaPredicted RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H1DP16402 221 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 ADCYAP1P18509 176 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BOP23527 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 NPY1RP25929 384 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PRDX3P30048 256 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BBP33778 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SNCAP37840 140 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 GPR1P46091 355 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 GYG1P46976 350 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 INPP1P49441 399 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 GPM6AP51674 278 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 STC1P52823 247 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BDP58876 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TAS2R20P59543 309 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 S100A10P60903 97 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BCP62807 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 RPL8P62917 257 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 PAFAH1B2P68402 229 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SLC35A2P78381 396 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H1AQ02539 215 aaPredicted RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 HSD52Q0P140 79 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SMAGPQ0VAQ4 97 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ST3GAL4Q11206 333 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 DHRS2Q13268 280 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PNOCQ13519 176 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF345Q14585 488 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF77Q15935 545 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST2H2BEQ16778 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TMEM183BQ1AE95 376 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TBC1D28Q2M2D7 210 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CCSMST1Q4G0I0 132 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ATP6AP1LQ52LC2 224 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TRMT12Q53H54 448 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 LRRC10Q5BKY1 277 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 FAM162BQ5T6X4 162 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CPTPQ5TA50 214 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF57Q68EA5 555 aaPredicted RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF660Q6AZW8 331 aaPredicted RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 OPN5Q6U736 354 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 STAC2Q6ZMT1 411 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 C19orf35Q6ZS72 473 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SLC25A26Q70HW3 274 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ACOT1Q86TX2 421 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 IFNEQ86WN2 208 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 GKN2Q86XP6 184 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CMTM1Q8IZ96 169 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TMEM123Q8N131 208 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 VWDEQ8N2E2 1590 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZADH2Q8N4Q0 377 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 FAM71E2Q8N5Q1 922 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 KIR3DL3Q8N743 410 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ANKRD31Q8N7Z5 1873 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF615Q8N8J6 731 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PLPP5Q8NEB5 264 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 NOXO1Q8NFA2 376 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR5A1Q8NGJ0 315 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR1S2Q8NGQ3 325 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR2A12Q8NGT7 310 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR2T35Q8NGX2 323 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 RXFP2Q8WXD0 754 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BHQ93079 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 RPEQ96AT9 228 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 UPRTQ96BW1 309 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 FLYWCH2Q96CP2 140 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 C10orf35Q96D05 121 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ACY3Q96HD9 319 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ADTRPQ96IZ2 230 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 YPEL4Q96NS1 127 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OXGR1Q96P68 337 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TSPAN32Q96QS1 320 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR2A7Q96R45 310 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR4K3Q96R72 315 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PEBP4Q96S96 227 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 IMMP2LQ96T52 175 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 GPER1Q99527 375 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BNQ99877 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BMQ99879 126 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 NDFIP1Q9BT67 221 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 EFCAB11Q9BUY7 163 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 FAIM2Q9BWQ8 316 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TAPBPLQ9BX59 468 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SPANXDQ9BXN6 97 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SAMD10Q9BYL1 202 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms