RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 MINDY2Q8NBR6 621 aa11.38□□□□□ -0.59
RNF4-208ENST00000507247 GLYATL2Q8WU03 294 aa11.38□□□□□ -0.59
RNF4-208ENST00000507247 RITA1Q96K30 269 aa11.38□□□□□ -0.59
RNF4-208ENST00000507247 SSX3Q99909 188 aa11.38□□□□□ -0.59
RNF4-208ENST00000507247 PRDM13Q9H4Q3 707 aa11.38□□□□□ -0.59
RNF4-208ENST00000507247 WASHC3Q9Y3C0 194 aa11.38□□□□□ -0.59
RNF4-208ENST00000507247 SONP18583 2426 aaKnown RBP11.38□□□□□ -0.59
RNF4-208ENST00000507247 C9orf170A2RU37 121 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 H7C2Y5 167 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 RBFOX2O43251 390 aaKnown RBP eCLIP11.37□□□□□ -0.59
RNF4-208ENST00000507247 S1PR2O95136 353 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 CRYZL1O95825 349 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 IGKV1-39P01597 117 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 HLA-AP01891 365 aaKnown RBP11.37□□□□□ -0.59
RNF4-208ENST00000507247 IGKV1D-39P04432 117 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 IL5P05113 134 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 UCP1P25874 307 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 BRS3P32247 399 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 MC5RP33032 325 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 LPAR6P43657 344 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 ARHGDIBP52566 201 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 TAGLNQ01995 201 aaKnown RBP11.37□□□□□ -0.59
RNF4-208ENST00000507247 EBI3Q14213 229 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 RTL8BQ17RB0 113 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 ANKRD55Q3KP44 614 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 C4orf46Q504U0 113 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 Q6YL49 198 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 LYG2Q86SG7 212 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 PDPNQ86YL7 162 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 TCTEX1D1Q8N7M0 179 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 SIGLECL1Q8N7X8 197 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 OR4S2Q8NH73 311 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 LHFPL5Q8TAF8 219 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 CASTOR1Q8WTX7 329 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 TMEM222Q9H0R3 208 aa11.37□□□□□ -0.59
RNF4-208ENST00000507247 ANK3Q12955 4377 aaKnown RBP11.37□□□□□ -0.59
RNF4-208ENST00000507247 SVEP1Q4LDE5 3571 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 HIVEP2P31629 2446 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 H3BUX3 64 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 IFNA2P01563 188 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 IGHV4-59P01825 116 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 RRASP10301 218 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 IER3P46695 156 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 AANATQ16613 207 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 TMEM177Q53S58 311 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 THNSL2Q86YJ6 484 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 Q8N6K4 173 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 ZDHHC16Q969W1 377 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 EAF1Q96JC9 268 aaPredicted RBP11.36□□□□□ -0.59
RNF4-208ENST00000507247 FAM212BQ9NTI7 297 aaPredicted RBP11.36□□□□□ -0.59
RNF4-208ENST00000507247 KCNIP3Q9Y2W7 256 aa11.36□□□□□ -0.59
RNF4-208ENST00000507247 SRRM4A7MD48 611 aaKnown RBP11.35□□□□□ -0.59
RNF4-208ENST00000507247 PRAF2O60831 178 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 B3GALNT1O75752 331 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 DHFRP00374 187 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 HPRT1P00492 218 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 MOSP00540 346 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 CNTFRP26992 372 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 HES1Q14469 280 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 HNF4GQ14541 408 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 TATDN3Q17R31 274 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 KRTAP21-3Q3LHN1 58 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 DHRS7BQ6IAN0 325 aaPredicted RBP11.35□□□□□ -0.59
RNF4-208ENST00000507247 OR2T10Q8NGZ9 312 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 CD300LFQ8TDQ1 290 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 FLYWCH2Q96CP2 140 aaKnown RBP11.35□□□□□ -0.59
RNF4-208ENST00000507247 HARBI1Q96MB7 349 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 TCF19Q9Y242 345 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 NAV3Q8IVL0 2385 aa11.35□□□□□ -0.59
RNF4-208ENST00000507247 C7orf66A4D0T2 115 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 SHOXO15266 292 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 HOXA3O43365 443 aaPredicted RBP11.34□□□□□ -0.59
RNF4-208ENST00000507247 CRLF1O75462 422 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 CDS2O95674 445 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 IGLV2-23P01705 113 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 SERPINE2P07093 398 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 ANXA3P12429 323 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 TMEM11P17152 192 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 RPS16P62249 146 aaKnown RBP11.34□□□□□ -0.59
RNF4-208ENST00000507247 LY6EQ16553 131 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 LIN54Q6MZP7 749 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 C11orf88Q6PI97 169 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 LIAT1Q6ZQX7 453 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 SELENOHQ8IZQ5 122 aaKnown RBP11.34□□□□□ -0.59
RNF4-208ENST00000507247 OR4C13Q8NGP0 309 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 ZNF431Q8TF32 576 aaPredicted RBP11.34□□□□□ -0.59
RNF4-208ENST00000507247 TMEM56Q96MV1 263 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 PLEKHA2Q9HB19 425 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 COMMD9Q9P000 198 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 ALG5Q9Y673 324 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 TMEM56-RWDD3S4R434 201 aa11.34□□□□□ -0.59
RNF4-208ENST00000507247 NIPBLQ6KC79 2804 aaeCLIP11.33□□□□□ -0.6
RNF4-208ENST00000507247 FN1P02751 2386 aaKnown RBP11.33□□□□□ -0.6
RNF4-208ENST00000507247 A0A0A6YYJ9 748 aa11.33□□□□□ -0.6
RNF4-208ENST00000507247 A6NDX4 124 aa11.33□□□□□ -0.6
RNF4-208ENST00000507247 DUS4LO95620 317 aaKnown RBP11.33□□□□□ -0.6
RNF4-208ENST00000507247 FAM106CPP0CH98 169 aa11.33□□□□□ -0.6
RNF4-208ENST00000507247 RPA2P15927 270 aa11.33□□□□□ -0.6
RNF4-208ENST00000507247 F2RL1P55085 397 aa11.33□□□□□ -0.6
RNF4-208ENST00000507247 CBX3Q13185 183 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms