RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RNASE10Q5GAN6 216 aaKnown RBP12.93□□□□□ -0.34
SF3A1-209ENST00000496189 VAX1Q5SQQ9 334 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 ZNF329Q86UD4 541 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 ZNF383Q8NA42 475 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 TMEM229BQ8NBD8 167 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 ZBTB34Q8NCN2 500 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 ABHD5Q8WTS1 349 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 ZNF2Q9BSG1 426 aaPredicted RBP12.93□□□□□ -0.34
SF3A1-209ENST00000496189 SLC5A7Q9GZV3 580 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 PARP11Q9NR21 331 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 RBMX2Q9Y388 322 aaKnown RBP12.93□□□□□ -0.34
SF3A1-209ENST00000496189 PRELID3BQ9Y3B1 194 aa12.93□□□□□ -0.34
SF3A1-209ENST00000496189 IGKV1D-13A0A0B4J2D9 117 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 GSTZ1O43708 216 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-209ENST00000496189 PROP1O75360 226 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 PF4P02776 101 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 IGKV1-13P0DP09 117 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 CNTFRP26992 372 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 LGALS7P47929 136 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 PYDC2Q56P42 97 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 CXorf66Q5JRM2 361 aaPredicted RBP12.92□□□□□ -0.34
SF3A1-209ENST00000496189 HSD17B10Q99714 261 aaKnown RBP12.92□□□□□ -0.34
SF3A1-209ENST00000496189 SOSTQ9BQB4 213 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 HSPB9Q9BQS6 159 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 OR51J1Q9H342 316 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 FBXL15Q9H469 300 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 ZFP57Q9NU63 452 aa12.92□□□□□ -0.34
SF3A1-209ENST00000496189 METTL1Q9UBP6 276 aaKnown RBP12.92□□□□□ -0.34
SF3A1-209ENST00000496189 A6NHS1 94 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 NUDT19A8MXV4 375 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 SHOXO15266 292 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 IGF1P05019 195 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 S100GP29377 79 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 SLC6A1P30531 599 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 DUTP33316 252 aaKnown RBP12.91□□□□□ -0.34
SF3A1-209ENST00000496189 MEF2DQ14814 521 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 HIST2H2BDQ6DRA6 164 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 LPCAT3Q6P1A2 487 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 ZNF66Q6ZN08 573 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 CCDC190Q86UF4 302 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 ARRDC1Q8N5I2 433 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 OR6Q1Q8NGQ2 317 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 MOB3AQ96BX8 217 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 RITA1Q96K30 269 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 HARBI1Q96MB7 349 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 ZNF580Q9UK33 172 aa12.91□□□□□ -0.34
SF3A1-209ENST00000496189 LINC01548A6NM66 108 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 M0QYG6 137 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 RAB3DO95716 219 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 CD3DP04234 171 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 IGKV1-16P04430 117 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 ETV6P41212 452 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 TMEM267Q0VDI3 215 aaPredicted RBP12.9□□□□□ -0.34
SF3A1-209ENST00000496189 ZNF660Q6AZW8 331 aaPredicted RBP12.9□□□□□ -0.34
SF3A1-209ENST00000496189 STEAP1BQ6NZ63 245 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 TMEM65Q6PI78 240 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 C10orf99Q6UWK7 81 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 KCTD9Q7L273 389 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 CMTM1Q8IZ96 169 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 BVESQ8NE79 360 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 CCL28Q9NRJ3 127 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 NBEAL1Q6ZS30 2694 aa12.9□□□□□ -0.34
SF3A1-209ENST00000496189 TRRAPQ9Y4A5 3859 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 ELANEP08246 267 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 CD40LGP29965 261 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 CATR1Q13166 79 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 FOXE3Q13461 319 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 PSG5Q15238 335 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 VMA21Q3ZAQ7 101 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 Q8N402 240 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 TCTEX1D2Q8WW35 142 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 RBMXL1Q96E39 390 aaKnown RBP12.89□□□□□ -0.35
SF3A1-209ENST00000496189 C5orf30Q96GV9 206 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 CLCC1Q96S66 551 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 THAP7Q9BT49 309 aaPredicted RBP12.89□□□□□ -0.35
SF3A1-209ENST00000496189 V9GYH0 126 aa12.89□□□□□ -0.35
SF3A1-209ENST00000496189 MGAM2Q2M2H8 2515 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 IGHV7-81A0A0B4J1V7 117 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 TRAV41A0A0B4J266 112 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 DISC1C4P0D8 188 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 ATP6V0E1O15342 81 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 SLC25A17O43808 307 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 CREBL2O60519 120 aaPredicted RBP12.88□□□□□ -0.35
SF3A1-209ENST00000496189 IGLV2-14P01704 120 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 CD74P04233 296 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 AKAIN1P0CW23 69 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 KIR2DS2P43631 304 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 LINC00205P59089 165 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 AP3S2P59780 193 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 RPL23AP62750 156 aaKnown RBP12.88□□□□□ -0.35
SF3A1-209ENST00000496189 TCTEX1D4Q5JR98 221 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 MFSD4AQ8N468 514 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 TCTEX1D1Q8N7M0 179 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 POC5Q8NA72 575 aa12.88□□□□□ -0.35
SF3A1-209ENST00000496189 OSR1Q8TAX0 266 aaPredicted RBP12.88□□□□□ -0.35
SF3A1-209ENST00000496189 TINAGL1Q9GZM7 467 aaPredicted RBP12.88□□□□□ -0.35
SF3A1-209ENST00000496189 LINC00473A8K010 186 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 FCGR3BO75015 233 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 CNIH1O95406 144 aa12.87□□□□□ -0.35
SF3A1-209ENST00000496189 CRYZL1O95825 349 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms