RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SMIM4Q8WVI0 70 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 SECTM1Q8WVN6 248 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 HARBI1Q96MB7 349 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 SOSTQ9BQB4 213 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 C6orf62Q9GZU0 229 aaPredicted RBP12.5□□□□□ -0.41
UPF3A-208ENST00000484246 SLC5A7Q9GZV3 580 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 MMP27Q9H306 513 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 PRELID3BQ9Y3B1 194 aa12.5□□□□□ -0.41
UPF3A-208ENST00000484246 CCDC160A6NGH7 325 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 J3QRK9 145 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 RBFOX2O43251 390 aaKnown RBP eCLIP12.49□□□□□ -0.41
UPF3A-208ENST00000484246 TSPAN15O95858 294 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 PMP2P02689 132 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 HLA-DMAP28067 261 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 KIR2DS2P43631 304 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 NDPQ00604 133 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 C19orf54Q5BKX5 351 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 C10orf99Q6UWK7 81 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 TREML4Q6UXN2 200 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 ZNF562Q6V9R5 426 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 OR6F1Q8NGZ6 308 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 OR4S2Q8NH73 311 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 DIRAS2Q96HU8 199 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 ZNF2Q9BSG1 426 aaPredicted RBP12.49□□□□□ -0.41
UPF3A-208ENST00000484246 FXYD6Q9H0Q3 95 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 CCL28Q9NRJ3 127 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 NDUFA13Q9P0J0 144 aa12.49□□□□□ -0.41
UPF3A-208ENST00000484246 METTL1Q9UBP6 276 aaKnown RBP12.49□□□□□ -0.41
UPF3A-208ENST00000484246 TSSC4Q9Y5U2 329 aaPredicted RBP12.49□□□□□ -0.41
UPF3A-208ENST00000484246 SHOXO15266 292 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 ATP6V0E1O15342 81 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 CRYZL1O95825 349 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 IGHG4P01861 327 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 CD74P04233 296 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 CSF1P09603 554 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 VDAC1P21796 283 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 GNRHRP30968 328 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 UBE2KP61086 200 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 CX3CL1P78423 397 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 FOXE3Q13461 319 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 MFSD4AQ8N468 514 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 ARRDC1Q8N5I2 433 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 TCTEX1D1Q8N7M0 179 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 FCAMRQ8WWV6 532 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 TAS2R8Q9NYW2 309 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 KLK11Q9UBX7 282 aa12.48□□□□□ -0.41
UPF3A-208ENST00000484246 SRRM4A7MD48 611 aaKnown RBP12.47□□□□□ -0.41
UPF3A-208ENST00000484246 GSTZ1O43708 216 aaPredicted RBP12.47□□□□□ -0.41
UPF3A-208ENST00000484246 SLC25A17O43808 307 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 FCGR3BO75015 233 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 ELANEP08246 267 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 PPIFP30405 207 aaKnown RBP12.47□□□□□ -0.41
UPF3A-208ENST00000484246 SLC6A1P30531 599 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TNFSF8P32971 234 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 UCP3P55916 312 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 BRWD1-AS2P59051 145 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 FXYD4P59646 89 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 SSBP2P81877 361 aaPredicted RBP12.47□□□□□ -0.41
UPF3A-208ENST00000484246 DGCR2P98153 550 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 CATR1Q13166 79 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 PLGLAQ15195 96 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TEX38Q6PEX7 206 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 ZNF818PQ6ZRF7 136 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 ZNF329Q86UD4 541 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 PPP1R27Q86WC6 154 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TMEM17Q86X19 198 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TEX45Q8NA69 505 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TMEM229BQ8NBD8 167 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TCTEX1D2Q8WW35 142 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 DCUN1D5Q9BTE7 237 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TPSG1Q9NRR2 321 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 ZFP57Q9NU63 452 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 LINC00527Q9UJ94 153 aa12.47□□□□□ -0.41
UPF3A-208ENST00000484246 TRRAPQ9Y4A5 3859 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 TCRBV4S1A1TA0A5B7 111 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 FCN1O00602 326 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 CA2P00918 260 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 TAS2R19P59542 299 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 VMA21Q3ZAQ7 101 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 RNASE10Q5GAN6 216 aaKnown RBP12.46□□□□□ -0.41
UPF3A-208ENST00000484246 LHFPL1Q86WI0 220 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 MINDY2Q8NBR6 621 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 MYOZ3Q8TDC0 251 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 PARP11Q9NR21 331 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 FBXO7Q9Y3I1 522 aa12.46□□□□□ -0.41
UPF3A-208ENST00000484246 TRAV41A0A0B4J266 112 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 CREBL2O60519 120 aaPredicted RBP12.45□□□□□ -0.42
UPF3A-208ENST00000484246 IGLV1-40P01703 118 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 CD3DP04234 171 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 EGR2P11161 476 aaPredicted RBP12.45□□□□□ -0.42
UPF3A-208ENST00000484246 PSMB8P28062 276 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 RPL23AP62750 156 aaKnown RBP12.45□□□□□ -0.42
UPF3A-208ENST00000484246 IL18Q14116 193 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 POU2AF1Q16633 256 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 MRGPRG-AS1Q2M3A8 158 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 AADACL3Q5VUY0 350 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 LPCAT3Q6P1A2 487 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 OR4F17Q8NGA8 305 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 CD300LFQ8TDQ1 290 aa12.45□□□□□ -0.42
UPF3A-208ENST00000484246 ARPC1AQ92747 370 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms