RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 STARD9Q9P2P6 4700 aa9.36□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 A0A0G2JLM5 398 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 M0R1X1 148 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 MFNGO00587 321 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 GSTT2P0CG29 244 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 GSTT2BP0CG30 244 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ZP3P21754 424 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 CD40LGP29965 261 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SSX1Q16384 188 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 KCTD21Q4G0X4 260 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ZNF773Q6PK81 442 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 GRPEL2Q8TAA5 225 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 ELOVL1Q9BW60 279 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 TINAGL1Q9GZM7 467 aaPredicted RBP9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 NDUFB11Q9NX14 153 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SIGLEC8Q9NYZ4 499 aa9.35□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 IGHV4-30-4P0DP06 118 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 DUTP33316 252 aaKnown RBP9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 DYRK1AQ13627 763 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 HES5Q5TA89 166 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 HAPLN4Q86UW8 402 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR10R2Q8NGX6 335 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR10J5Q8NHC4 309 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 RAB3CQ96E17 227 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 OR2D2Q9H210 308 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 EDA2RQ9HAV5 297 aa9.34□□□□□ -0.91
MSH5-SAPCD1-205ENST00000476085 SACSQ9NZJ4 4579 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 IGKV1D-8A0A087WSZ0 117 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 C13orf42A0A1B0GVH6 325 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 IFITM5A6NNB3 132 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 LINC00473A8K010 186 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 PDCD5O14737 125 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 BET1O15155 118 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TNFAIP8O95379 198 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 CNIH1O95406 144 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TRBV12-3P01733 135 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 CSN3P07498 182 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RRASP10301 218 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 HIST1H1DP16402 221 aaKnown RBP9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 GNB3P16520 340 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RAB6AP20340 208 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 MYL9P24844 172 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 PSMB9P28065 219 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 OR10A3P58181 314 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 NR2C2APQ86WQ0 139 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 H1FOOQ8IZA3 346 aaPredicted RBP9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TEX45Q8NA69 505 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ADAD2Q8NCV1 583 aaKnown RBP9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 BVESQ8NE79 360 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 OR9G4Q8NGQ1 327 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 USMG5Q96IX5 58 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 HARBI1Q96MB7 349 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ZMAT4Q9H898 229 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 VCX3AQ9NNX9 186 aa9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ZNF230Q9UIE0 474 aaPredicted RBP9.33□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TRBV9A0A0B4J1U6 114 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TRDV1A0A1B0GX56 115 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ANKRD34BA5PLL1 514 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 MSGN1A6NI15 193 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 AADACP22760 399 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 UBE2KP61086 200 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 PRSS8Q16651 343 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ANKRD13BQ86YJ7 626 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 CENPOQ9BU64 300 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ZNF355PQ9NSJ1 428 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 PEF1Q9UBV8 284 aaKnown RBP9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ADAM30Q9UKF2 790 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RYR2Q92736 4967 aa9.32□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 A0A087WXM4 84 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 SHOXO15266 292 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 IGLV2-14P01704 120 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 LYL1P12980 280 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 SYNJ2BPP57105 145 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RTL8BQ17RB0 113 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ADAMTSL5Q6ZMM2 481 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 MAFIPQ8WZ33 124 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ADTRPQ96IZ2 230 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 KRTAP3-3Q9BYR6 98 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 KRTAP3-2Q9BYR7 98 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ELF5Q9UKW6 265 aaPredicted RBP9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 SSR3Q9UNL2 185 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 DMRT1Q9Y5R6 373 aa9.31□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 A0A0B4J203 849 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 H0Y980 276 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 HLA-DQB1P01920 261 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 DTYMKP23919 212 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 GADD45AP24522 165 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 FGF9P31371 208 aaPredicted RBP9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 DEFA5Q01523 94 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ZNF45Q02386 682 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 EIF4EBP1Q13541 118 aaPredicted RBP9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 HAGHQ16775 308 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 KLK9Q2XQG4 91 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 LINC00322Q6ZN03 302 aaPredicted RBP9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TSPAN14Q8NG11 270 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 OSR1Q8TAX0 266 aaPredicted RBP9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 SRSF12Q8WXF0 261 aaKnown RBP9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 KLK9Q9UKQ9 250 aa9.3□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 IZUMO1RA6ND01 250 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 METTL21EPA6NDL7 271 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms