RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 NOTOA8MTQ0 251 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 RRASP10301 218 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 CD40LGP29965 261 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 RTL8BQ17RB0 113 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 BVESQ8NE79 360 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 FCGR1BQ92637 280 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 ADTRPQ96IZ2 230 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 TMEM68Q96MH6 324 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 GINS4Q9BRT9 223 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 ATG5Q9H1Y0 275 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 STUB1Q9UNE7 303 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 SMAD5-AS1Q9Y6J3 95 aa12.53□□□□□ -0.4
COL9A3-208ENST00000469802 LINC00473A8K010 186 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 SHOXO15266 292 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 LY86O95711 162 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 SPNP16150 400 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 PSMB9P28065 219 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 TALDO1P37837 337 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 CBX3Q13185 183 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 HACD4Q5VWC8 232 aa12.52□□□□□ -0.41
COL9A3-208ENST00000469802 CNIH1O95406 144 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 UBE2KP61086 200 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 PITPNAQ00169 270 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 CDNFQ49AH0 187 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 TPRA1Q86W33 373 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 OR5T1Q8NG75 326 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 OR6Q1Q8NGQ2 317 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 DCSTAMPQ9H295 470 aa12.51□□□□□ -0.41
COL9A3-208ENST00000469802 RBM7Q9Y580 266 aaKnown RBP12.51□□□□□ -0.41
COL9A3-208ENST00000469802 DNAH7Q8WXX0 4024 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 CRYZL1O95825 349 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 GP9P14770 177 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 PRSS8Q16651 343 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 SFXN4Q6P4A7 337 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 ZNF645Q8N7E2 425 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 TEX45Q8NA69 505 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 OSR1Q8TAX0 266 aaPredicted RBP12.5□□□□□ -0.41
COL9A3-208ENST00000469802 LGALS14Q8TCE9 139 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 NUDCD2Q8WVJ2 157 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 ASCL2Q99929 193 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 YTHDF1Q9BYJ9 559 aaKnown RBP12.5□□□□□ -0.41
COL9A3-208ENST00000469802 TINAGL1Q9GZM7 467 aaPredicted RBP12.5□□□□□ -0.41
COL9A3-208ENST00000469802 RANGRFQ9HD47 186 aaPredicted RBP12.5□□□□□ -0.41
COL9A3-208ENST00000469802 OR2W1Q9Y3N9 320 aa12.5□□□□□ -0.41
COL9A3-208ENST00000469802 A0A0G2JLM5 398 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 C13orf42A0A1B0GVH6 325 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 TMEM235A6NFC5 223 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 SSX5O60225 188 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 SCGNO76038 276 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 IGLV1-51P01701 117 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 IGLV2-14P01704 120 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 HLA-DQB1P01920 261 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 ZP3P21754 424 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 DYRK1AQ13627 763 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 VMA21Q3ZAQ7 101 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 ZNF773Q6PK81 442 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 OVCH2Q7RTZ1 564 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 Q9H521 79 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 ZNF355PQ9NSJ1 428 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 DAPK2Q9UIK4 370 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 RYR3Q15413 4870 aa12.49□□□□□ -0.41
COL9A3-208ENST00000469802 IGKV1D-13A0A0B4J2D9 117 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 RBMXL2O75526 392 aaKnown RBP12.48□□□□□ -0.41
COL9A3-208ENST00000469802 CTXN2P0C2S0 81 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 IGKV1-13P0DP09 117 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 DEFA5Q01523 94 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 EIF4EBP1Q13541 118 aaPredicted RBP12.48□□□□□ -0.41
COL9A3-208ENST00000469802 ZNF343Q6P1L6 599 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 CNIH2Q6PI25 160 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 IDO2Q6ZQW0 420 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 ADAD2Q8NCV1 583 aaKnown RBP12.48□□□□□ -0.41
COL9A3-208ENST00000469802 SRSF12Q8WXF0 261 aaKnown RBP12.48□□□□□ -0.41
COL9A3-208ENST00000469802 OR4C12Q96R67 309 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 ST6GALNAC5Q9BVH7 336 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 OR51E2Q9H255 320 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 RHBDL2Q9NX52 303 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 SSR3Q9UNL2 185 aa12.48□□□□□ -0.41
COL9A3-208ENST00000469802 RBMX2Q9Y388 322 aaKnown RBP12.48□□□□□ -0.41
COL9A3-208ENST00000469802 RRP15Q9Y3B9 282 aaKnown RBP12.48□□□□□ -0.41
COL9A3-208ENST00000469802 TRIM64CA6NLI5 447 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 TUSC2O75896 110 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 SAA1P0DJI8 122 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-208ENST00000469802 AADACP22760 399 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 NFYAP23511 347 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-208ENST00000469802 SCAND1P57086 179 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 KLF5Q13887 457 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-208ENST00000469802 CDK10Q15131 360 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 TNXAQ16473 311 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 KCTD9Q7L273 389 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 HAPLN4Q86UW8 402 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 SBSPONQ8IVN8 264 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 SLC25A38Q96DW6 304 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 USMG5Q96IX5 58 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 ELOVL1Q9BW60 279 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 ZNF430Q9H8G1 570 aaPredicted RBP12.47□□□□□ -0.41
COL9A3-208ENST00000469802 ANXA10Q9UJ72 324 aa12.47□□□□□ -0.41
COL9A3-208ENST00000469802 ANKRD34BA5PLL1 514 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 MSGN1A6NI15 193 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 SLC22A5O76082 557 aa12.46□□□□□ -0.41
COL9A3-208ENST00000469802 TRBV12-3P01733 135 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms