RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 SLX4IPQ5VYV7 408 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF621Q6ZSS3 439 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 CYS1Q717R9 158 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 GDPD3Q7L5L3 318 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 H2BFWTQ7Z2G1 175 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 MRPL21Q7Z2W9 205 aaKnown RBP3.15□□□□□ -1.91
HMGB1-207ENST00000468384 SELENOHQ8IZQ5 122 aaKnown RBP3.15□□□□□ -1.91
HMGB1-207ENST00000468384 PROKR2Q8NFJ6 384 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 OR10G7Q8NGN6 311 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 ACMSDQ8TDX5 336 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 PCNPQ8WW12 178 aaKnown RBP3.15□□□□□ -1.91
HMGB1-207ENST00000468384 FMO2Q99518 471 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 SH3GL1Q99961 368 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 NIPSNAP3BQ9BS92 247 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 HINT2Q9BX68 163 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 COMMD4Q9H0A8 199 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 NSRP1Q9H0G5 558 aaKnown RBP3.15□□□□□ -1.91
HMGB1-207ENST00000468384 CAB39LQ9H9S4 337 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 GUCA1BQ9UMX6 200 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 ERGIC3Q9Y282 383 aa3.15□□□□□ -1.91
HMGB1-207ENST00000468384 EXOGQ9Y2C4 368 aaKnown RBP3.15□□□□□ -1.91
HMGB1-207ENST00000468384 RBMX2Q9Y388 322 aaKnown RBP3.15□□□□□ -1.91
HMGB1-207ENST00000468384 IGHV3-38A0A0C4DH36 116 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 hADV38S2A0JD32 116 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 TRPC5OSA6NMA1 111 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 LRRN3E7EW58 273 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 OR2J3O76001 311 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 MOSP00540 346 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 GIG44P09565 113 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ZSCAN5DPP0CG00 497 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ALDH3A1P30838 453 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 RRM2P31350 389 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 S100A5P33763 92 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 BLVRAP53004 296 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 BASP1P80723 227 aaKnown RBP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 CIRBPQ14011 172 aaKnown RBP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 EIF2B1Q14232 305 aaKnown RBP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 OXA1LQ15070 435 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 KRTAP27-1Q3LI81 207 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ACTBL2Q562R1 376 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ADAMTSL4-AS1Q5T5F5 129 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 MRPL2Q5T653 305 aaKnown RBP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF343Q6P1L6 599 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 PRSS48Q7RTY5 328 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 TMEM179BQ7Z7N9 219 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 MOB3BQ86TA1 216 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ANGPTL5Q86XS5 388 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF440Q8IYI8 595 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 LINC01561Q8N1V8 128 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 CYB561A3Q8NBI2 242 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 OR8B12Q8NGG6 310 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 OR51L1Q8NGJ5 315 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 OR13C9Q8NGT0 318 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 CNIH3Q8TBE1 160 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 OR5P2Q8WZ92 322 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 GTF2H4Q92759 462 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 RDH12Q96NR8 316 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 TSSK3Q96PN8 268 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 IL4I1Q96RQ9 567 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 KRTAP4-1Q9BYQ7 146 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 PARP12Q9H0J9 701 aaKnown RBP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 IL36GQ9NZH8 169 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 ENPP5Q9UJA9 477 aa3.14□□□□□ -1.91
HMGB1-207ENST00000468384 SAMD4AQ9UPU9 718 aaKnown RBP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.14□□□□□ -1.91
HMGB1-207ENST00000468384 CENPBD1B2RD01 187 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 M0R2T5 61 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 WISP3O95389 354 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-207ENST00000468384 HLA-DRB1P01911 266 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 SERPINE2P07093 398 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 HSMCR30P0CW71 290 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 ACADSP16219 412 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 SDC1P18827 310 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 PRKACGP22612 351 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 GUCA1AP43080 201 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-207ENST00000468384 EMP1P54849 157 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 CNBPP62633 177 aaKnown RBP3.13□□□□□ -1.91
HMGB1-207ENST00000468384 CDK16Q00536 496 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 NDPQ00604 133 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 MADCAM1Q13477 382 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 KRTAP19-6Q3LI70 58 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 CYBRD1Q53TN4 286 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 UTF1Q5T230 341 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF600Q6ZNG1 722 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 TRMT10CQ7L0Y3 403 aaKnown RBP3.13□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF781Q8N8C0 355 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 YIPF7Q8N8F6 280 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 TMEM104Q8NE00 496 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 OR5J2Q8NH18 312 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 STAG3L4Q8TBR4 150 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 TMEM190Q8WZ59 177 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 OR8B4Q96RC9 309 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 DPY30Q9C005 99 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 POPDC3Q9HBV1 291 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 TMEM14BQ9NUH8 114 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 PLCXD1Q9NUJ7 323 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF446Q9NWS9 450 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 TAS2R5Q9NYW4 299 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 IL20Q9NYY1 176 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 ATPIF1Q9UII2 106 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms