RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TBPP20226 339 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 THBS3P49746 956 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 MSMO1Q15800 293 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 DHRS11Q6UWP2 260 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 GLDNQ6ZMI3 551 aaPredicted RBP9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 CCDC190Q86UF4 302 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF383Q8NA42 475 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 TMEM229BQ8NBD8 167 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 OR8H1Q8NGG4 311 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 SECTM1Q8WVN6 248 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 RBMXL1Q96E39 390 aaKnown RBP9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF107Q9UII5 783 aaPredicted RBP9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 RBMX2Q9Y388 322 aaKnown RBP9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 WASHC3Q9Y3C0 194 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 V9GYH0 126 aa9.4□□□□□ -0.9
SQSTM1-206ENST00000466342 STAB2Q8WWQ8 2551 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 H7C2Y5 167 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 M0QYG6 137 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 APOA2P02652 100 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 PTBP1P26599 531 aaKnown RBP eCLIP9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 HOXD3P31249 432 aaPredicted RBP9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 ETV6P41212 452 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 LINC00205P59089 165 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 TAS2R19P59542 299 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 FXYD4P59646 89 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 HERV-K104P61576 105 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 CD83Q01151 205 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 ZNF79Q15937 498 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 ABCA11PQ4W5N1 156 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 RNASE10Q5GAN6 216 aaKnown RBP9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 CENPVQ7Z7K6 275 aaPredicted RBP9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 PDPNQ86YL7 162 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 C5orf56Q8N8D9 126 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 OR5AU1Q8NGC0 362 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 OR6F1Q8NGZ6 308 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 MOB3AQ96BX8 217 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 ADTRPQ96IZ2 230 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 ZNF2Q9BSG1 426 aaPredicted RBP9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 SLC5A7Q9GZV3 580 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 BATF3Q9NR55 127 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 PLSCR3Q9NRY6 295 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 SLC35D1Q9NTN3 355 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 TAS2R8Q9NYW2 309 aa9.39□□□□□ -0.91
SQSTM1-206ENST00000466342 CD74P04233 296 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 CD3DP04234 171 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 DUTP33316 252 aaKnown RBP9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 TSPAN5P62079 268 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 TAGLNQ01995 201 aaKnown RBP9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 EIF4EBP1Q13541 118 aaPredicted RBP9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 MMDQ15546 238 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 CNPY1Q3B7I2 92 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 SPANXN2Q5MJ10 180 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 TMEM17Q86X19 198 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 Q8N9W7 124 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 ZBTB34Q8NCN2 500 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 DDB2Q92466 427 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 BORCS5Q969J3 196 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 TINAGL1Q9GZM7 467 aaPredicted RBP9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 FXYD6Q9H0Q3 95 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 CCL28Q9NRJ3 127 aa9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 LIN7CQ9NUP9 197 aaKnown RBP9.38□□□□□ -0.91
SQSTM1-206ENST00000466342 NCBP2LA6PVI3 153 aaKnown RBP9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 LINC00473A8K010 186 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 NBR2O15453 112 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 RAB3DO95716 219 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 PF4P02776 101 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 IFNA6P05013 189 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 RRASP10301 218 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 PF4V1P10720 104 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 LYL1P12980 280 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 F2RL1P55085 397 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 RTL8BQ17RB0 113 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 TMEM95Q3KNT9 176 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 PYDC2Q56P42 97 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 STEAP1BQ6NZ63 245 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 KCTD9Q7L273 389 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 ARRDC1Q8N5I2 433 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 FAM71E2Q8N5Q1 922 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 DPF1Q92782 380 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 RITA1Q96K30 269 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 HSD17B10Q99714 261 aaKnown RBP9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 RNF5Q99942 180 aa9.37□□□□□ -0.91
SQSTM1-206ENST00000466342 A0A1W2PRX2 142 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 ANKRD20A5PA0PJZ0 165 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 SH2D7A6NKC9 451 aaPredicted RBP9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 NDUFA3O95167 84 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 IGKV1-16P04430 117 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 AKAIN1P0CW23 69 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 CNTFRP26992 372 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 GNRHRP30968 328 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 RPL30P62888 115 aaKnown RBP9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 CBX3Q13185 183 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 MEF2DQ14814 521 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 ZNF66Q6ZN08 573 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 ZNF818PQ6ZRF7 136 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 LHFPL1Q86WI0 220 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 Q8N402 240 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 BVESQ8NE79 360 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 NPBQ8NG41 125 aa9.36□□□□□ -0.91
SQSTM1-206ENST00000466342 OR4D10Q8NGI6 311 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms