RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 G3V318 75 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 I3L521 148 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 ITGB1BP1O14713 200 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 RAB29O14966 203 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 SLC22A1O15245 554 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 ATP6V0E1O15342 81 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 NAPSAO96009 420 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 CD37P11049 281 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 SRMP19623 302 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 CNTFRP26992 372 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 HTR2CP28335 458 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 MC5RP33032 325 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 OR3A3P47888 321 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 RAB9AP51151 201 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 QRFPP83859 136 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 ZNF616Q08AN1 781 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 PMS2P11Q13670 270 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 KIAA0141Q14154 515 aaPredicted RBP5.61□□□□□ -1.51
USP54-208ENST00000461520 INSL4Q14641 139 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 SPHARQ15513 63 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 HSD17B12Q53GQ0 312 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 RBM48Q5RL73 367 aaKnown RBP5.61□□□□□ -1.51
USP54-208ENST00000461520 FAM27D1Q5T7N8 215 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 ZNF660Q6AZW8 331 aaPredicted RBP5.61□□□□□ -1.51
USP54-208ENST00000461520 OR10K2Q6IF99 312 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 ZNF880Q6PDB4 577 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 MOB1BQ7L9L4 216 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 C6orf201Q7Z4U5 140 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 C5orf24Q7Z6I8 188 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 MINDY2Q8NBR6 621 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 OR1N2Q8NGR9 330 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 IL1F10Q8WWZ1 152 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 RBMXL1Q96E39 390 aaKnown RBP5.61□□□□□ -1.51
USP54-208ENST00000461520 CYYR1Q96J86 154 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 FAAP24Q9BTP7 215 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 TMED9Q9BVK6 235 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 ANKRD60Q9BZ19 345 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 IFI27L2Q9H2X8 130 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 CHMP1AQ9HD42 196 aaPredicted RBP5.61□□□□□ -1.51
USP54-208ENST00000461520 PARP11Q9NR21 331 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 PLEKHJ1Q9NW61 149 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 MGAT4AQ9UM21 535 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 WSB1Q9Y6I7 421 aa5.61□□□□□ -1.51
USP54-208ENST00000461520 TRBV6-6A0A0A6YYG2 114 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 PTGES3LE9PB15 166 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 RHODO00212 210 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 RBBP9O75884 186 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 UCHL1P09936 223 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 CT45A6P0DMU7 189 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 CT45A5P0DMU8 189 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 CT45A7P0DMV0 189 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 BLVRBP30043 206 aaPredicted RBP5.6□□□□□ -1.51
USP54-208ENST00000461520 CRIP2P52943 208 aaPredicted RBP5.6□□□□□ -1.51
USP54-208ENST00000461520 UNC119Q13432 240 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 MED22Q15528 200 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 ASPHD1Q5U4P2 390 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 CEACAM19Q7Z692 300 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 ZNF429Q86V71 674 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 TCTEX1D1Q8N7M0 179 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 OR6M1Q8NGM8 313 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 RNF5Q99942 180 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 AGMATQ9BSE5 352 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 NICN1Q9BSH3 213 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 URM1Q9BTM9 101 aaKnown RBP5.6□□□□□ -1.51
USP54-208ENST00000461520 RBM38Q9H0Z9 239 aaKnown RBP5.6□□□□□ -1.51
USP54-208ENST00000461520 GNB4Q9HAV0 340 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 SCN3BQ9NY72 215 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 HSF4Q9ULV5 492 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 ZNF256Q9Y2P7 627 aaPredicted RBP5.6□□□□□ -1.51
USP54-208ENST00000461520 LSM2Q9Y333 95 aaKnown RBP5.6□□□□□ -1.51
USP54-208ENST00000461520 SACSQ9NZJ4 4579 aa5.6□□□□□ -1.51
USP54-208ENST00000461520 STAB2Q8WWQ8 2551 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 A0A0A6YYD4 124 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 A0A1W2PN81 502 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 H0YJW9 148 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 SLC17A2O00624 439 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 OVOL1O14753 267 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 ARSBP15848 533 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 ZBTB25P24278 435 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 CHRNA7P36544 502 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 RANBP1P43487 201 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 GNB1P62873 340 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 CX3CL1P78423 397 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 HLA-DRB3P79483 266 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 NDPQ00604 133 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 TMEM267Q0VDI3 215 aaPredicted RBP5.59□□□□□ -1.51
USP54-208ENST00000461520 PLGLAQ15195 96 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 TRAM1Q15629 374 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 ECSCRQ19T08 205 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 RPL39P5Q59GN2 51 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 FAM209BQ5JX69 171 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 PYHIN1Q6K0P9 492 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 CD200R1LQ6Q8B3 271 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 FAM131AQ6UXB0 335 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 FAM89BQ8N5H3 189 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 SETD6Q8TBK2 473 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 UFD1Q92890 307 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 PTX4Q96A99 478 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 LPAR5Q9H1C0 372 aa5.59□□□□□ -1.51
USP54-208ENST00000461520 FBXL15Q9H469 300 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms