RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 LRRK2Q5S007 2527 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 IGKV1D-17A0A075B6S4 117 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 IGHV3-21A0A0B4J1V1 117 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 CLEC18AA5D8T8 446 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 FAM90A27PA6NNH2 459 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 H0Y980 276 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 CLDN14O95500 239 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 FABP4P15090 132 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 S100PP25815 95 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 RAB5CP51148 216 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 LGALS4P56470 323 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 ACP7Q6ZNF0 438 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 MOB3BQ86TA1 216 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 H1FOOQ8IZA3 346 aaPredicted RBP6.98□□□□□ -1.29
CD44-208ENST00000428726 ABHD12Q8N2K0 398 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 ZNF561Q8N587 486 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 COMMD1Q8N668 190 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 CLEC18CQ8NCF0 446 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 OR5D13Q8NGL4 314 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 LINC01560Q8TB33 94 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 Q8WTZ3 238 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 GGACTQ9BVM4 153 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 DOPEY2Q9Y3R5 2298 aa6.98□□□□□ -1.29
CD44-208ENST00000428726 TRGV8A0A0C4DH27 118 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 RAC2P15153 192 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 CCL3L1P16619 93 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 BRWD1-AS2P59051 145 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 RPL23AP62750 156 aaKnown RBP6.97□□□□□ -1.29
CD44-208ENST00000428726 MLANAQ16655 118 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 NMSQ5H8A3 153 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 PYY3Q5JQD4 70 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 INO80CQ6PI98 192 aaPredicted RBP6.97□□□□□ -1.29
CD44-208ENST00000428726 ZNF497Q6ZNH5 498 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 MOB1BQ7L9L4 216 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 HAPLN4Q86UW8 402 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 GCSAMQ8N6F7 178 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 ZNF383Q8NA42 475 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 LRFN3Q9BTN0 628 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 CABLES2Q9BTV7 478 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 SLC25A31Q9H0C2 315 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 C11orf1Q9H5F2 150 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 PLEKHF2Q9H8W4 249 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 PATZ1Q9HBE1 687 aaKnown RBP6.97□□□□□ -1.29
CD44-208ENST00000428726 STRAPQ9Y3F4 350 aaKnown RBP6.97□□□□□ -1.29
CD44-208ENST00000428726 PLAUP00749 431 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 RNF224P0DH78 156 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 HOXB1P14653 301 aaPredicted RBP6.97□□□□□ -1.29
CD44-208ENST00000428726 TFF3Q07654 80 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 AKR1C8PQ5T2L2 129 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 GFRALQ6UXV0 394 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 C19orf35Q6ZS72 473 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 ZNF429Q86V71 674 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 LYG1Q8N1E2 194 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 C15orf54Q8N8G6 183 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 SNX22Q96L94 193 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 OR4C12Q96R67 309 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 RPRMQ9NS64 109 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 DOK5Q9P104 306 aa6.97□□□□□ -1.29
CD44-208ENST00000428726 RBFOX3A6NFN3 312 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 IFITM10A6NMD0 228 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 NPIPB11E5RHQ5 1161 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.96□□□□□ -1.29
CD44-208ENST00000428726 SYNGR2O43760 224 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 PROP1O75360 226 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 SCAF4O95104 1147 aaKnown RBP6.96□□□□□ -1.29
CD44-208ENST00000428726 RAB2AP61019 212 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 ERVK11-1P61568 191 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 ID3Q02535 119 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 DIAPH2-AS1Q14236 149 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 ZNF266Q14584 549 aa6.96□□□□□ -1.29
CD44-208ENST00000428726 A0A0U1RQK1 487 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 ODAMA1E959 279 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 IQCF6A8MYZ5 107 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 IGKV3-15P01624 115 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 GATA2P23769 480 aaPredicted RBP6.96□□□□□ -1.3
CD44-208ENST00000428726 IGFL2Q6UWQ7 119 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 SSMEM1Q8WWF3 244 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 SCRT1Q9BWW7 348 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 QTRT1Q9BXR0 403 aaKnown RBP6.96□□□□□ -1.3
CD44-208ENST00000428726 RBKSQ9H477 322 aa6.96□□□□□ -1.3
CD44-208ENST00000428726 LYRM2Q9NU23 88 aaPredicted RBP6.96□□□□□ -1.3
CD44-208ENST00000428726 TRAV38-1A0A0B4J264 116 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 TMEM30CPA0ZSE6 113 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 PGPEP1LA6NFU8 196 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 TMEM210A6NLX4 147 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 ZNF891A8MT65 544 aaPredicted RBP6.95□□□□□ -1.3
CD44-208ENST00000428726 AP4M1O00189 453 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 PITX3O75364 302 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 WNT2P09544 360 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 BAXQ07812 192 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 RTP5Q14D33 572 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 PRSS8Q16651 343 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 PRAMEF5Q5TYX0 476 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 RPUSD4Q96CM3 377 aaKnown RBP6.95□□□□□ -1.3
CD44-208ENST00000428726 MEGF10Q96KG7 1140 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 TOLLIPQ9H0E2 274 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 WIPI2Q9Y4P8 454 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 PTPN13Q12923 2485 aa6.95□□□□□ -1.3
CD44-208ENST00000428726 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.95□□□□□ -1.3
CD44-208ENST00000428726 A0A0G2JNJ9 132 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms