RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SEC22AQ96IW7 307 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 GINS4Q9BRT9 223 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 CCL28Q9NRJ3 127 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 MDFIC2A0A1B0GVS7 189 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 MPPED1O15442 326 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 NFYAP23511 347 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-202ENST00000394943 RELBQ01201 579 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 PSG5Q15238 335 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF429Q86V71 674 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 CHAC2Q8WUX2 184 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 MARVELD1Q9BSK0 173 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 SLC2A9Q9NRM0 540 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 SERTAD4Q9NUC0 356 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 CACFD1Q9UGQ2 172 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 SCP2D1Q9UJQ7 156 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF257Q9Y2Q1 563 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 ARID1AO14497 2285 aa5.56□□□□□ -1.52
LIMA1-202ENST00000394943 RRHO14718 337 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 PITX3O75364 302 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 IGLV1-40P01703 118 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 NFYBP25208 207 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 SRP14P37108 136 aaKnown RBP5.55□□□□□ -1.52
LIMA1-202ENST00000394943 LGALS4P56470 323 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 PROK1P58294 105 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 LYG1Q8N1E2 194 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 OR4S2Q8NH73 311 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 TSNAXQ99598 290 aaKnown RBP5.55□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM222Q9H0R3 208 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 NAA60Q9H7X0 242 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 ABCB10Q9NRK6 738 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 BET1O15155 118 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 NBR2O15453 112 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 CRYGCP07315 174 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 HLA-DMAP28067 261 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 PPIFP30405 207 aaKnown RBP5.55□□□□□ -1.52
LIMA1-202ENST00000394943 GNG10P50151 68 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 C5orf64Q2M2E5 130 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 IL17RELQ6ZVW7 336 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 CHIAQ9BZP6 476 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 SLC5A7Q9GZV3 580 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM14BQ9NUH8 114 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 FOXA2Q9Y261 457 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-202ENST00000394943 CGB1A6NKQ9 187 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 SRRM4A7MD48 611 aaKnown RBP5.55□□□□□ -1.52
LIMA1-202ENST00000394943 M0QYG6 137 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 LYRM1O43325 122 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 PTTG1O95997 202 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 OR8U9P0C7N5 309 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF562Q6V9R5 426 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 Q6ZSV7 163 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 CCDC71LQ8N9Z2 235 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 OR51S1Q8NGJ8 323 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 OR8U1Q8NH10 309 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 OR56B4Q8NH76 319 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 RITA1Q96K30 269 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 NUBP2Q9Y5Y2 271 aa5.55□□□□□ -1.52
LIMA1-202ENST00000394943 FAM172BPA6NC97 362 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 H3BUX3 64 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 RUNX1Q01196 453 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 CATR1Q13166 79 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 TMEM128Q5BJH2 165 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 NMSQ5H8A3 153 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 COMMD1Q8N668 190 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 GLYATL2Q8WU03 294 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF747Q9BV97 191 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 OCEL1Q9H607 264 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 SIGLEC9Q9Y336 463 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 IGHV7-81A0A0B4J1V7 117 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 C7orf66A4D0T2 115 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 MEIS3P1A6NDR6 274 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 SRPXP78539 464 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 IL15RAQ13261 267 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 RTL8BQ17RB0 113 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 TBC1D26Q86UD7 250 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 IL1F10Q8WWZ1 152 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 C11orf1Q9H5F2 150 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 MRPS7Q9Y2R9 242 aaKnown RBP5.54□□□□□ -1.52
LIMA1-202ENST00000394943 ARPC1BO15143 372 aaKnown RBP5.54□□□□□ -1.52
LIMA1-202ENST00000394943 KBTBD11O94819 623 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 SFT2D2O95562 160 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 APOA2P02652 100 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 IGKV1-16P04430 117 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 HERV-K104P61576 105 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 KIAA0141Q14154 515 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-202ENST00000394943 SSX2Q16385 188 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 KIAA2026Q5HYC2 2103 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 IDO2Q6ZQW0 420 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 VSTM2AQ8TAG5 236 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 CITED1Q99966 193 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 SLC25A33Q9BSK2 321 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 SLC35D1Q9NTN3 355 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 PRELID3BQ9Y3B1 194 aa5.54□□□□□ -1.52
LIMA1-202ENST00000394943 TRBV9A0A0B4J1U6 114 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 C3orf85A0A1B0GTC6 90 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 NPIPB5A8MRT5 1133 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 SNRPGP15A8MWD9 76 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 TEX22C9J3V5 150 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 UPK2O00526 184 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 KCNAB3O43448 404 aa5.53□□□□□ -1.52
LIMA1-202ENST00000394943 IGKV1D-33P01593 117 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms