RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 COL8A2P25067 703 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 NDUFA6P56556 154 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 EDDM3AQ14507 147 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 STUMQ69YW2 141 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 SPSB3Q6PJ21 355 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 ZNF497Q6ZNH5 498 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 TPRX1Q8N7U7 411 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 TMEM222Q9H0R3 208 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 MAGT1Q9H0U3 335 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 TRAPPC2LQ9UL33 140 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 PPIAL4AQ9Y536 164 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 DOPEY2Q9Y3R5 2298 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 TENM4Q6N022 2769 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 CENPEQ02224 2701 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 TRAV38-1A0A0B4J264 116 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 J3QKU1 62 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 ZNF737O75373 536 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 SRP19P09132 144 aaKnown RBP10.32□□□□□ -0.76
CIITA-202ENST00000381835 FBP1P09467 338 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 ZNF674Q2M3X9 581 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 TEX36Q5VZQ5 186 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 SP5Q6BEB4 398 aaPredicted RBP10.32□□□□□ -0.76
CIITA-202ENST00000381835 DUX4L9Q6RFH8 374 aaPredicted RBP10.32□□□□□ -0.76
CIITA-202ENST00000381835 TBC1D26Q86UD7 250 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 ZNF429Q86V71 674 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 FAM185AQ8N0U4 392 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 TMEM252Q8N6L7 170 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 OR5C1Q8NGR4 320 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 CCL13Q99616 98 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 SPIN2AQ99865 258 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 SPIN2BQ9BPZ2 258 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 C11orf1Q9H5F2 150 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 LYRM2Q9NU23 88 aaPredicted RBP10.32□□□□□ -0.76
CIITA-202ENST00000381835 KIAA1456Q9P272 454 aa10.32□□□□□ -0.76
CIITA-202ENST00000381835 DOCK11Q5JSL3 2073 aa10.31□□□□□ -0.76
CIITA-202ENST00000381835 HSD17B6O14756 317 aa10.31□□□□□ -0.76
CIITA-202ENST00000381835 NDUFS6O75380 124 aaKnown RBP10.31□□□□□ -0.76
CIITA-202ENST00000381835 S100A2P29034 98 aa10.31□□□□□ -0.76
CIITA-202ENST00000381835 GNRHRP30968 328 aa10.31□□□□□ -0.76
CIITA-202ENST00000381835 CDX1P47902 265 aaPredicted RBP10.31□□□□□ -0.76
CIITA-202ENST00000381835 COQ2Q96H96 371 aa10.31□□□□□ -0.76
CIITA-202ENST00000381835 SNX22Q96L94 193 aa10.31□□□□□ -0.76
CIITA-202ENST00000381835 HELZ2Q9BYK8 2649 aaKnown RBP10.31□□□□□ -0.76
CIITA-202ENST00000381835 WRBO00258 174 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 TMPRSS2O15393 492 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 ADAM20O43506 726 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 CST7O76096 145 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 SCTP09683 121 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 RD3LP0DJH9 198 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 COX6B1P14854 86 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 GLIPR1P48060 266 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 DYNLT3P51808 116 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 DLK1P80370 383 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 CXorf66Q5JRM2 361 aaPredicted RBP10.3□□□□□ -0.76
CIITA-202ENST00000381835 ZNF343Q6P1L6 599 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 PRR18Q8N4B5 295 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 TMEM217Q8N7C4 229 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 FAM216BQ8N7L0 139 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 PPP1R35Q8TAP8 253 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 GNPNAT1Q96EK6 184 aaPredicted RBP10.3□□□□□ -0.76
CIITA-202ENST00000381835 GAFA1Q96PS6 74 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 DMRT1Q9Y5R6 373 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 URGCP-MRPS24S4R325 110 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 A0A087WWC5 75 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 TRBV6-6A0A0A6YYG2 114 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 TMEM30CPA0ZSE6 113 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 GOSR1O95249 250 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 ELOBQ15370 118 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 OR2B11Q5JQS5 317 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 AKR1C8PQ5T2L2 129 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 ZNF788Q6ZQV5 615 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 SELENOHQ8IZQ5 122 aaKnown RBP10.3□□□□□ -0.76
CIITA-202ENST00000381835 UBALD1Q8TB05 177 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 Q8WTZ3 238 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 TVP23CQ96ET8 276 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 SDSLQ96GA7 329 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 TMEM56Q96MV1 263 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 ZNF665Q9H7R5 613 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 DOK5Q9P104 306 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 TMEM56-RWDD3S4R434 201 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 DSCAML1Q8TD84 2053 aa10.3□□□□□ -0.76
CIITA-202ENST00000381835 KIR2DS1A0A191URI9 304 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 NDUFS7O75251 213 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 SCAF4O95104 1147 aaKnown RBP10.29□□□□□ -0.76
CIITA-202ENST00000381835 TK1P04183 234 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 CXCL1P09341 107 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 KIR2DS4P43632 304 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 EDDM3BP56851 147 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 TLE4Q04727 773 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 ICAM4Q14773 271 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 KIR2DS1Q14954 304 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 SLC35E4Q6ICL7 350 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 GAPTQ8N292 157 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 CYB561D1Q8N8Q1 229 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 NEU4Q8WWR8 484 aaPredicted RBP10.29□□□□□ -0.76
CIITA-202ENST00000381835 NIPSNAP3BQ9BS92 247 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 GAR1Q9NY12 217 aaKnown RBP10.29□□□□□ -0.76
CIITA-202ENST00000381835 WSB1Q9Y6I7 421 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 NKX6-3A6NJ46 265 aa10.29□□□□□ -0.76
CIITA-202ENST00000381835 MGST3O14880 152 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms