RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 LOC105371242A0A075B767 164 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 NPFFO15130 113 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 LCN2P80188 198 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 NGFRP08138 427 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 RPL39P5Q59GN2 51 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 FAM201AQ5SY85 155 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 OR1P1Q8NH06 330 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 OR51M1Q9H341 326 aa11.76□□□□□ -0.53
COL4A1-201ENST00000375820 RRHO14718 337 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 IFITM3Q01628 133 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 KLF14Q8TD94 323 aaPredicted RBP11.75□□□□□ -0.53
COL4A1-201ENST00000375820 CCDC88CQ9P219 2028 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 MOSPD3O75425 235 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 TMPRSS3P57727 454 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 ZNF818PQ6ZRF7 136 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 OR10S1Q8NGN2 331 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 TPRP12270 2363 aaKnown RBP11.75□□□□□ -0.53
COL4A1-201ENST00000375820 CA11O75493 328 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 FAM106AQ4KMX7 169 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 GCSAMQ8N6F7 178 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 ZNRF1Q8ND25 227 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 ST6GALNAC6Q969X2 333 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 CBLN4Q9NTU7 201 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 ASXL3Q9C0F0 2248 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 ODAMA1E959 279 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 PRR19A6NJB7 356 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 MEF2BQ02080 365 aaPredicted RBP11.75□□□□□ -0.53
COL4A1-201ENST00000375820 LAMTOR1Q6IAA8 161 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 ERASQ7Z444 233 aa11.75□□□□□ -0.53
COL4A1-201ENST00000375820 ITLN2Q8WWU7 325 aaPredicted RBP11.75□□□□□ -0.53
COL4A1-201ENST00000375820 PARD6GQ9BYG4 376 aaPredicted RBP11.75□□□□□ -0.53
COL4A1-201ENST00000375820 HLA-DQB1P01920 261 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 ZNF506Q5JVG8 444 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 DNAJC4Q9NNZ3 241 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 SCN2AQ99250 2005 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 ZFC3H1O60293 1989 aaKnown RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 TRBV5-3A0A0A0MS03 114 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 LINC00862A6NCI5 91 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 MARCH11A6NNE9 402 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 PRR33A8MZF0 331 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 PROB1E7EW31 1015 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 MC5RP33032 325 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 MARS2Q96GW9 593 aaKnown RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 PRDM6Q9NQX0 595 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 KIAA1551Q9HCM1 1747 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 MAP1BP46821 2468 aaKnown RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 TRAV8-6A0A0B4J262 113 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 M0R381 172 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 IL4P05112 153 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 PUSL1Q8N0Z8 303 aaKnown RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 NPIPB3Q92617 1050 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 TRBV20OR9-2A0A075B6H5 130 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 GZMMP51124 257 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 FOXA3P55318 350 aaPredicted RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 SMAGPQ0VAQ4 97 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 ACSF3Q4G176 576 aaPredicted RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 SLC25A45Q8N413 288 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 LHFPL6Q9Y693 200 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 DXOO77932 396 aaKnown RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 ZNF345Q14585 488 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 TMEM170BQ5T4T1 132 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 C8orf82Q6P1X6 216 aaPredicted RBP11.74□□□□□ -0.53
COL4A1-201ENST00000375820 SHISA5Q8N114 240 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 TUBA4BQ9H853 241 aa11.74□□□□□ -0.53
COL4A1-201ENST00000375820 RECKO95980 971 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 FUT5Q11128 374 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 TTC32Q5I0X7 151 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 FAM209AQ5JX71 171 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 MMD2Q8IY49 270 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 ZCCHC14Q8WYQ9 949 aaKnown RBP11.73□□□□□ -0.53
COL4A1-201ENST00000375820 TUBD1Q9UJT1 453 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 C4orf51C9J302 202 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 SERF2P84101 59 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 PET117Q6UWS5 81 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 B4E171 279 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 TMEM136Q6ZRR5 245 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 LINC00305Q7Z4B0 112 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 ZNF107Q9UII5 783 aaPredicted RBP11.73□□□□□ -0.53
COL4A1-201ENST00000375820 SOX21Q9Y651 276 aaPredicted RBP11.73□□□□□ -0.53
COL4A1-201ENST00000375820 CTSSP25774 331 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 TOMM7Q9P0U1 55 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 ADAMTSL1Q8N6G6 1762 aa11.73□□□□□ -0.53
COL4A1-201ENST00000375820 PSG9Q00887 426 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 TNFRSF9Q07011 255 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 ZP4Q12836 540 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 WNT10AQ9GZT5 417 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 RREB1Q92766 1687 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 K7ERU9 68 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 PCSK4Q6UW60 755 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 TMEM45BQ96B21 275 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 IGHV1-69-2A0A0G2JMI3 117 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 FCARP24071 287 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 STPG3Q8N7X2 389 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 FOXJ2Q9P0K8 574 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 CIRBPQ14011 172 aaKnown RBP11.72□□□□□ -0.53
COL4A1-201ENST00000375820 TRIP12Q14669 1992 aaPredicted RBP11.72□□□□□ -0.53
COL4A1-201ENST00000375820 AGAP20933 346 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 ZNF660Q6AZW8 331 aaPredicted RBP11.72□□□□□ -0.53
COL4A1-201ENST00000375820 FAM159AQ6UWV7 190 aa11.72□□□□□ -0.53
COL4A1-201ENST00000375820 RNF115Q9Y4L5 304 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms