RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 INSL4Q14641 139 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 ATG4DQ86TL0 474 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 RNF183Q96D59 192 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 Q9HAA7 133 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PPIAL4AQ9Y536 164 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 CNOT1A5YKK6 2376 aaKnown RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 ZNF98A6NK75 572 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 LEUTXA8MZ59 168 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SNAI2O43623 268 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 KLF9Q13886 244 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 ST3GAL2Q16842 350 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 WNT2BQ93097 391 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FOXB1Q99853 325 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 HS3ST2Q9Y278 367 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SHPRHQ149N8 1683 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 MST1RQ04912 1400 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FAM90A18PA6NE21 464 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FAM90A16PA6NEW6 464 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FAM90A9PA6NNJ1 464 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FAM90A5PA8MXJ8 464 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 K7N7A8 449 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 CYB5R3P00387 301 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 MBPP02686 304 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FAM90A15PP0C7V4 464 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FAM90A14PP0C7W9 464 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 DAPP51397 102 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 UCP2P55851 309 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 ADAD2Q8NCV1 583 aaKnown RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 OR52E5Q8NH55 327 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 WDR34Q96EX3 536 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SMIM14Q96QK8 99 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SCNM1Q9BWG6 230 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 C1QTNF4Q9BXJ3 329 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 A0A1B0GWA3 101 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PGPEP1LA6NFU8 196 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 C19orf67A6NJJ6 358 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 MDH2P40926 338 aaKnown RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 UNC119Q13432 240 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SERTAD4-AS1Q5TG53 156 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 MRM1Q6IN84 353 aaKnown RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 GAGE2AQ6NT46 116 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 DND1Q8IYX4 353 aaKnown RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 C15orf53Q8NAA6 179 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 MS4A4AQ96JQ5 239 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 KCNE5Q9UJ90 142 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SHANK1Q9Y566 2161 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 DUOX1Q9NRD9 1551 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 CACNA1SQ13698 1873 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 A0A1W2PP11 408 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 IGKV4-1P06312 121 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 CTSGP08311 255 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 GLULP15104 373 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 DEFB103AP81534 67 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 TM4SF18Q96CE8 201 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PRSS21Q9Y6M0 314 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 ATRNO75882 1429 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 TRAV8-3A0A0A6YYJ7 113 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PLXNB1O43157 2135 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 DHHO43323 396 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 FOXH1O75593 365 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PLNP26678 52 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 HAMPP81172 84 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 C16orf47Q6ZP98 133 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-202ENST00000375405 C15orf39Q6ZRI6 1047 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SLC35E3Q7Z769 313 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 NT5CQ8TCD5 201 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 CT55Q8WUE5 264 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PPP1R1CQ8WVI7 109 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 SIGMAR1Q99720 223 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 MGST2Q99735 147 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PRSS16Q9NQE7 514 aa4.03□□□□□ -1.76
SCN1A-202ENST00000375405 PPLO60437 1756 aa4.03□□□□□ -1.77
SCN1A-202ENST00000375405 LTN1O94822 1766 aa4.03□□□□□ -1.77
SCN1A-202ENST00000375405 NWD2Q9ULI1 1742 aa4.03□□□□□ -1.77
SCN1A-202ENST00000375405 COL3A1P02461 1466 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SMIM18P0DKX4 95 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 NBL1P41271 181 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 KLF5Q13887 457 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MPV17LQ2QL34 196 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 PABPC1L2AQ5JQF8 200 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ARRDC1Q8N5I2 433 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 NPWQ8N729 165 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MRPL43Q8N983 215 aaKnown RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 GATA6Q92908 595 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 DNAJC30Q96LL9 226 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SPATA25Q9BR10 227 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 IFI27L2Q9H2X8 130 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MTFP1Q9UDX5 166 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 COLQQ9Y215 455 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 PREX1Q8TCU6 1659 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 TRGV1A0A0A0MS02 117 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ALX3O95076 343 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 LEPROTL1O95214 131 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MMP9P14780 707 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ATXN8Q156A1 80 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ZXDCQ2QGD7 858 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SPTSSBQ8NFR3 76 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 OR52I2Q8NH67 350 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SPSB1Q96BD6 273 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 DSCR8Q96T75 97 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms