RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HSPB7Q9UBY9 170 aa11.25□□□□□ -0.61
PTPRF-202ENST00000372405 LRRK2Q5S007 2527 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 H3BP45 60 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 ATG12O94817 140 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 IAPPP10997 89 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 EFNA4P52798 201 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 VAMP2P63027 116 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 PRB3Q04118 309 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-202ENST00000372405 TNFRSF9Q07011 255 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 DIAPH2-AS1Q14236 149 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 LY6G5BQ8NDX9 201 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 CXorf58Q96LI9 332 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 PATZ1Q9HBE1 687 aaKnown RBP11.24□□□□□ -0.61
PTPRF-202ENST00000372405 KLF2Q9Y5W3 355 aaPredicted RBP11.24□□□□□ -0.61
PTPRF-202ENST00000372405 AUP1Q9Y679 476 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 SESN1Q9Y6P5 492 aa11.24□□□□□ -0.61
PTPRF-202ENST00000372405 VPS13CQ709C8 3753 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 PPIAL4CA0A0B4J2A2 164 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 ANKRD34BA5PLL1 514 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 FAM90A26D6RGX4 464 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 CRYZL1O95825 349 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 GAPDHP04406 335 aaKnown RBP11.23□□□□□ -0.61
PTPRF-202ENST00000372405 PPIAL4GP0DN37 164 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 KIR2DS2P43631 304 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 RAB14P61106 215 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 SSX9Q7RTT3 188 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 OR4S2Q8NH73 311 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 TMED6Q8WW62 240 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 ST6GALNAC6Q969X2 333 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 ADTRPQ96IZ2 230 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 RAB40CQ96S21 281 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 MRPL20Q9BYC9 149 aaKnown RBP11.23□□□□□ -0.61
PTPRF-202ENST00000372405 TMEM133Q9H2Q1 129 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 RBKSQ9H477 322 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-202ENST00000372405 KMT2BQ9UMN6 2715 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-202ENST00000372405 CST7O76096 145 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 IGKV1-16P04430 117 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 UBE2KP61086 200 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 TLE4Q04727 773 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 ABHD12Q8N2K0 398 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 OR9G1Q8NH87 305 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 RAB39BQ96DA2 213 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 SPOCK3Q9BQ16 436 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 WSB1Q9Y6I7 421 aa11.23□□□□□ -0.61
PTPRF-202ENST00000372405 TRAV3A0A0B4J244 114 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 LEUTXA8MZ59 168 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 TXNL1O43396 289 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 GOSR1O95249 250 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 NQO2P16083 231 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 GPR6P46095 362 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-202ENST00000372405 REG1BP48304 166 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 AARDQ4LEZ3 155 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 ZNF525Q8N782 197 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 UBAC2Q8NBM4 344 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 OR10X1Q8NGY0 326 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 QTRT1Q9BXR0 403 aaKnown RBP11.22□□□□□ -0.61
PTPRF-202ENST00000372405 ARV1Q9H2C2 271 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 PLA2G2EQ9NZK7 142 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 FAM208BQ5VWN6 2430 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 CHD6Q8TD26 2715 aa11.22□□□□□ -0.61
PTPRF-202ENST00000372405 JTBO76095 146 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 ZNF137PP52743 207 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 OR2B8PP59922 312 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 GNB2P62879 340 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 Q8N7P7 452 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 ZDHHC16Q969W1 377 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 SMIM8Q96KF7 97 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 SLC25A31Q9H0C2 315 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 SLC25A32Q9H2D1 315 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 TMEM140Q9NV12 185 aa11.21□□□□□ -0.61
PTPRF-202ENST00000372405 MED13LQ71F56 2210 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 IGHV2-26A0A0B4J1V2 119 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 IGLV1-47P01700 117 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 IGHV4-39P01824 125 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 RBP4P02753 201 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 FAM157CP0CG43 387 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 RELBQ01201 579 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 TMEM267Q0VDI3 215 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-202ENST00000372405 CLINT1Q14677 625 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 HAPLN4Q86UW8 402 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 OR5C1Q8NGR4 320 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 RHOVQ96L33 236 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 SSBP3Q9BWW4 388 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-202ENST00000372405 BARX1Q9HBU1 254 aaPredicted RBP11.21□□□□□ -0.62
PTPRF-202ENST00000372405 SLC35D1Q9NTN3 355 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 PSENENQ9NZ42 101 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 TNCP24821 2201 aa11.21□□□□□ -0.62
PTPRF-202ENST00000372405 FAM90A9PA6NNJ1 464 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 SRRM4A7MD48 611 aaKnown RBP11.2□□□□□ -0.62
PTPRF-202ENST00000372405 H0YJW9 148 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 RRASP10301 218 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 DYNLT3P51808 116 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 RPL23AP62750 156 aaKnown RBP11.2□□□□□ -0.62
PTPRF-202ENST00000372405 ARL16Q0P5N6 197 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 SPINK9Q5DT21 86 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 TMEM217Q8N7C4 229 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 OR5AN1Q8NGI8 311 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 TMEM186Q96B77 213 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 CITED4Q96RK1 184 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms