RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 MAP1LC3BQ9GZQ8 125 aa12.8□□□□□ -0.36
UPF3B-202ENST00000345865 FAM234AQ9H0X4 552 aa12.8□□□□□ -0.36
UPF3B-202ENST00000345865 HMGB3O15347 200 aaKnown RBP12.79□□□□□ -0.36
UPF3B-202ENST00000345865 SLC31A2O15432 143 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 LEAP2Q969E1 77 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 PINX1Q96BK5 328 aaKnown RBP12.79□□□□□ -0.36
UPF3B-202ENST00000345865 MALSU1Q96EH3 234 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 JPT1Q9UK76 154 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 SPTBN2O15020 2390 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 PCP4L1A6NKN8 68 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 YPEL1O60688 119 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 SSX9Q7RTT3 188 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 VKORC1L1Q8N0U8 176 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 PRSS33Q8NF86 280 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 EDARADDQ8WWZ3 215 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 YPEL2Q96QA6 119 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 C12orf57Q99622 126 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 TMEM147Q9BVK8 224 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 IFI27L2Q9H2X8 130 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 TIMM9Q9Y5J7 89 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 CUL9Q8IWT3 2517 aa12.79□□□□□ -0.36
UPF3B-202ENST00000345865 A0A087WWC5 75 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 C15orf62A8K5M9 175 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 CEBPZOSA8MTT3 80 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 F2RL2O00254 374 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 KLK10O43240 276 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 CGB3P0DN86 165 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 CGB7P0DN87 165 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 ERVFRD-1P60508 538 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 SLC35E3Q7Z769 313 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 OR10P1Q8NGE3 313 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 TMPRSS5Q9H3S3 457 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 LAMP3Q9UQV4 416 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 RAI1Q7Z5J4 1906 aaPredicted RBP12.78□□□□□ -0.36
UPF3B-202ENST00000345865 PIEZO2Q9H5I5 2752 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 M0R1X1 148 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 IFNA4P05014 189 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 CXCL1P09341 107 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 DEFA4P12838 97 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 FGF7P21781 194 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 CEACAM8P31997 349 aaPredicted RBP12.78□□□□□ -0.36
UPF3B-202ENST00000345865 TLE1Q04724 770 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 ELOBQ15370 118 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 ATP6V1FQ16864 119 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 C17orf58Q2M2W7 97 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 TGIF2LYQ8IUE0 185 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 Q8WTZ3 238 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 SLC25A22Q9H936 323 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 SEBOXQ9HB31 216 aaPredicted RBP12.78□□□□□ -0.36
UPF3B-202ENST00000345865 SLC39A9Q9NUM3 307 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 URGCP-MRPS24S4R325 110 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 ZGRF1Q86YA3 2104 aa12.78□□□□□ -0.36
UPF3B-202ENST00000345865 MDKP21741 143 aaPredicted RBP12.77□□□□□ -0.36
UPF3B-202ENST00000345865 ACACAQ13085 2346 aa12.77□□□□□ -0.36
UPF3B-202ENST00000345865 VWC2Q2TAL6 325 aa12.77□□□□□ -0.36
UPF3B-202ENST00000345865 Q8N7P7 452 aa12.77□□□□□ -0.36
UPF3B-202ENST00000345865 LHX4Q969G2 390 aa12.77□□□□□ -0.36
UPF3B-202ENST00000345865 GCM1Q9NP62 436 aa12.77□□□□□ -0.36
UPF3B-202ENST00000345865 CALYQ9NYX4 217 aa12.77□□□□□ -0.36
UPF3B-202ENST00000345865 TANC2Q9HCD6 1990 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 TRAV3A0A0B4J244 114 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 A8MXE2 369 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 UBE2CO00762 179 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 IGHV2-5P01817 119 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 BMP5P22003 454 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 CCKARP32238 428 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 C3orf36Q3SXR2 165 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 AARDQ4LEZ3 155 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 RBMS3Q6XE24 437 aaKnown RBP12.77□□□□□ -0.37
UPF3B-202ENST00000345865 MRGPRGQ86SM5 289 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 PPP1R35Q8TAP8 253 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 CIB3Q96Q77 187 aaPredicted RBP12.77□□□□□ -0.37
UPF3B-202ENST00000345865 NPCDR1Q9BY65 106 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 OR6C3Q9NZP0 311 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 VAX2Q9UIW0 290 aa12.77□□□□□ -0.37
UPF3B-202ENST00000345865 ROS1P08922 2347 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 HPRT1P00492 218 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 IGHV1-46P01743 117 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 S100A6P06703 90 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 CD81P60033 236 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 GNB2P62879 340 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 FAM222BQ8WU58 562 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 DCAF16Q9NXF7 216 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 PCNX1Q96RV3 2341 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 CYB5R3P00387 301 aaPredicted RBP12.76□□□□□ -0.37
UPF3B-202ENST00000345865 GATA4P43694 442 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 NUBP1P53384 320 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 FAM57AQ8TBR7 257 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 GATAD1Q8WUU5 269 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 SFXN3Q9BWM7 321 aa12.76□□□□□ -0.37
UPF3B-202ENST00000345865 MUC6Q6W4X9 2439 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 DYSFO75923 2080 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 IFNA17P01571 189 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 FABP9Q0Z7S8 132 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 CT45A1Q5HYN5 189 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 FFAR4Q5NUL3 377 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 TCF23Q7RTU1 214 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 DEFB108BQ8NET1 73 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 OR10G9Q8NGN4 311 aa12.75□□□□□ -0.37
UPF3B-202ENST00000345865 OR10G7Q8NGN6 311 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms