RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SPAG16Q8N0X2 631 aa17.71■□□□□ 0.43
SDC3-202ENST00000339394 CCDC71LQ8N9Z2 235 aa17.71■□□□□ 0.43
SDC3-202ENST00000339394 POC5Q8NA72 575 aa17.71■□□□□ 0.43
SDC3-202ENST00000339394 ADAD2Q8NCV1 583 aaKnown RBP17.71■□□□□ 0.43
SDC3-202ENST00000339394 RBM14Q96PK6 669 aaKnown RBP17.71■□□□□ 0.43
SDC3-202ENST00000339394 CHST1O43916 411 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 PEX14O75381 377 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 OR2F2O95006 317 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 CRYZL1O95825 349 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 RNASE1P07998 156 aaKnown RBP17.7■□□□□ 0.42
SDC3-202ENST00000339394 LIAT1Q6ZQX7 453 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 TMED4Q7Z7H5 227 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 TMEM230Q96A57 120 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 SLC25A33Q9BSK2 321 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 FLVCR2Q9UPI3 526 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 KIR2DS2P43631 304 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 F2RL1P55085 397 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 RPS16P62249 146 aaKnown RBP17.7■□□□□ 0.42
SDC3-202ENST00000339394 SRSF2Q01130 221 aaKnown RBP17.7■□□□□ 0.42
SDC3-202ENST00000339394 CBX3Q13185 183 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 RNF5Q99942 180 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 PALMDQ9NP74 551 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 PLSCR3Q9NRY6 295 aa17.7■□□□□ 0.42
SDC3-202ENST00000339394 LIN7CQ9NUP9 197 aaKnown RBP17.7■□□□□ 0.42
SDC3-202ENST00000339394 GPR137BO60478 399 aa17.69■□□□□ 0.42
SDC3-202ENST00000339394 TCRBP04435 133 aa17.69■□□□□ 0.42
SDC3-202ENST00000339394 AKR1C4P17516 323 aa17.69■□□□□ 0.42
SDC3-202ENST00000339394 CNTFRP26992 372 aa17.69■□□□□ 0.42
SDC3-202ENST00000339394 TMEM177Q53S58 311 aa17.69■□□□□ 0.42
SDC3-202ENST00000339394 DHRS7BQ6IAN0 325 aaPredicted RBP17.69■□□□□ 0.42
SDC3-202ENST00000339394 OR4S2Q8NH73 311 aa17.69■□□□□ 0.42
SDC3-202ENST00000339394 CD300LFQ8TDQ1 290 aa17.69■□□□□ 0.42
SDC3-202ENST00000339394 C3orf85A0A1B0GTC6 90 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 FAM181BA6NEQ2 426 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 NCBP2LA6PVI3 153 aaKnown RBP17.68■□□□□ 0.42
SDC3-202ENST00000339394 SHOXO15266 292 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 RBFOX2O43251 390 aaKnown RBP eCLIP17.68■□□□□ 0.428e-6■■■□□ 15.4
SDC3-202ENST00000339394 DCTN2Q13561 401 aaKnown RBP17.68■□□□□ 0.42
SDC3-202ENST00000339394 MMDQ15546 238 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 NRARPQ7Z6K4 114 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 PRIMA1Q86XR5 153 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 TCTEX1D1Q8N7M0 179 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 OR8H1Q8NGG4 311 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 NAA60Q9H7X0 242 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 RAB18Q9NP72 206 aa17.68■□□□□ 0.42
SDC3-202ENST00000339394 TEX13DA0A0J9YY54 714 aaPredicted RBP17.67■□□□□ 0.42
SDC3-202ENST00000339394 CRYM-AS1A6NIL9 109 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 SRRM4A7MD48 611 aaKnown RBP17.67■□□□□ 0.42
SDC3-202ENST00000339394 VSIG10L2P0DP72 767 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 ZNF585BQ52M93 769 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 C16orf82Q7Z2V1 217 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 CENPSQ8N2Z9 138 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 OSR1Q8TAX0 266 aaPredicted RBP17.67■□□□□ 0.42
SDC3-202ENST00000339394 ENKURQ8TC29 256 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 HARBI1Q96MB7 349 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 TP53RKQ96S44 253 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 C20orf85Q9H1P6 137 aa17.67■□□□□ 0.42
SDC3-202ENST00000339394 H0Y980 276 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 TRIM77I1YAP6 450 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 ARPC1BO15143 372 aaKnown RBP17.66■□□□□ 0.42
SDC3-202ENST00000339394 LGALS7P47929 136 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 SP6Q3SY56 376 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 SGPP2Q8IWX5 399 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 NPBQ8NG41 125 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 NUDT15Q9NV35 164 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 C1RLQ9NZP8 487 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 MOB4Q9Y3A3 225 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 NBR2O15453 112 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 HPRT1P00492 218 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 SUPT4H1P63272 117 aaKnown RBP17.66■□□□□ 0.42
SDC3-202ENST00000339394 TMEM128Q5BJH2 165 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 SLC25A42Q86VD7 318 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 DUSP18Q8NEJ0 188 aa17.66■□□□□ 0.42
SDC3-202ENST00000339394 FAM212BQ9NTI7 297 aaPredicted RBP17.66■□□□□ 0.42
SDC3-202ENST00000339394 TRAV6A0A075B6T7 132 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 IGLV2-23P01705 113 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 AMY1AP04745 511 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 OR5AC1P0C628 307 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 LPAR6P43657 344 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 PSG5Q15238 335 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 C11orf88Q6PI97 169 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 FAM71E2Q8N5Q1 922 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 Q8N9W7 124 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 TSNAXQ99598 290 aaKnown RBP17.65■□□□□ 0.42
SDC3-202ENST00000339394 PLEKHA2Q9HB19 425 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 KCNIP3Q9Y2W7 256 aa17.65■□□□□ 0.42
SDC3-202ENST00000339394 M0QZK8 103 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 FGF16O43320 207 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 B3GALNT1O75752 331 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 S1PR2O95136 353 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 NDUFA3O95167 84 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 SERPINE2P07093 398 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 ANXA7P20073 488 aaKnown RBP17.64■□□□□ 0.41
SDC3-202ENST00000339394 BLCAPP62952 87 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 DHODHQ02127 395 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 VKORC1L1Q8N0U8 176 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 C5orf56Q8N8D9 126 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 GLYATL2Q8WU03 294 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 GALNT14Q96FL9 552 aa17.64■□□□□ 0.41
SDC3-202ENST00000339394 KIAA1456Q9P272 454 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms