RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MINOS1Q5TGZ0 78 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 THOC7Q6I9Y2 204 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 C11orf87Q6NUJ2 197 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 VMO1Q7Z5L0 202 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 PDPNQ86YL7 162 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 PNKDQ8N490 385 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 C9orf62Q8N4C0 152 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 GPR146Q96CH1 333 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 SIRT7Q9NRC8 400 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 MINOS1-NBL1R4GNA1 71 aa12.1□□□□□ -0.47
CCDC88C-202ENST00000334448 TRAV20A0A0B4J274 112 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 MARCH11A6NNE9 402 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 FAM90A26D6RGX4 464 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 RNASEK-C17orf49H0YIS7 233 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 NQO2P16083 231 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 HTR1DP28221 377 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 MC5RP33032 325 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 RAB13P51153 203 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 UBE2E1P51965 193 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 ID3Q02535 119 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 HABP2Q14520 560 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 SMCO1Q147U7 214 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 MIDNQ504T8 468 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 TMEM177Q53S58 311 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 OR2B11Q5JQS5 317 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 HIST2H2BCQ6DN03 193 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 LAMTOR1Q6IAA8 161 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 PRSS54Q6PEW0 395 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 OSR1Q8TAX0 266 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 SLC35D1Q9NTN3 355 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 DPM3Q9P2X0 92 aa12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 TBL2Q9Y4P3 447 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-202ENST00000334448 ABCA2Q9BZC7 2435 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 LEUTXA8MZ59 168 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 H0YIZ8 118 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 ST8SIA3O43173 380 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 TOX4O94842 621 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 MBPP02686 304 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 GAPDHP04406 335 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 IL6RP08887 468 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 CEACAM3P40198 252 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 NKX2-5P52952 324 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 DLX1P56177 255 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 RAB32Q13637 225 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 TPTE2P1Q5T6R2 138 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 Q6ZRM9 215 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 FOXRED2Q8IWF2 684 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 OR8H3Q8N146 312 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 THAP6Q8TBB0 222 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 R3HDM4Q96D70 268 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 AIFM2Q9BRQ8 373 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 RNF126Q9BV68 326 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 C11orf1Q9H5F2 150 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 CACFD1Q9UGQ2 172 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 TNFSF18Q9UNG2 199 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 POMT1Q9Y6A1 747 aa12.08□□□□□ -0.48
CCDC88C-202ENST00000334448 ASH1LQ9NR48 2969 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 CREBBPQ92793 2442 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 NBPF19A0A087WUL8 3843 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 A0A1W2PPI3 338 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 DEDDO75618 318 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 HRASP01112 189 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 FGF2P09038 288 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 DIAPH2-AS1Q14236 149 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 ZNF345Q14585 488 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 LDLRAD2Q5SZI1 272 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 RNASE11Q8TAA1 199 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 RPEQ96AT9 228 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 LPAR2Q9HBW0 351 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 GSKIPQ9P0R6 139 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 MBD2Q9UBB5 411 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 CACNG5Q9UF02 275 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 WASHC3Q9Y3C0 194 aa12.07□□□□□ -0.48
CCDC88C-202ENST00000334448 IGHV1-3A0A0C4DH29 117 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 K7EPK0 472 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 CRYZL1O95825 349 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 KRASP01116 189 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 ARG1P05089 322 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 EPHA1P21709 976 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 G6PCP35575 357 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 NKX2-1P43699 371 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 ERVK-16P61578 105 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 KLRD1Q13241 179 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 PDLIM3Q53GG5 364 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 CCDC144NLQ6NUI1 221 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 H2BFWTQ7Z2G1 175 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 FAM71E2Q8N5Q1 922 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 LINC01356Q8N9X3 169 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 OR4C13Q8NGP0 309 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 RHOVQ96L33 236 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 FOXC2Q99958 501 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 REG4Q9BYZ8 158 aa12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 RCL1Q9Y2P8 373 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 YLPM1P49750 1951 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-202ENST00000334448 FXYD6-FXYD2A0A087WZ82 144 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 J3QLI3 93 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 OR2F2O95006 317 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 RLN2P04090 185 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 IGKV1-16P04430 117 aa12.05□□□□□ -0.48
CCDC88C-202ENST00000334448 REG1BP48304 166 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms