RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 DEFB108BQ8NET1 73 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 TANC2Q9HCD6 1990 aa19.82■□□□□ 0.76
TRIM54-201ENST00000296098 ERVK-16P61578 105 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 AARDQ4LEZ3 155 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 CYB561D1Q8N8Q1 229 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 S1PR3Q99500 378 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 ANKRD11Q6UB99 2663 aaPredicted RBP19.81■□□□□ 0.76
TRIM54-201ENST00000296098 DSCAML1Q8TD84 2053 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 TSPAN9O75954 239 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 FOLR2P14207 255 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 DAOP14920 347 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 HIST1H2BAQ96A08 127 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 JKAMPQ9P055 326 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 ZNF835Q9Y2P0 537 aa19.81■□□□□ 0.76
TRIM54-201ENST00000296098 GYPAP02724 150 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 FBP1P09467 338 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 ZNF788Q6ZQV5 615 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 SSX9Q7RTT3 188 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 CENPVQ7Z7K6 275 aaPredicted RBP19.8■□□□□ 0.76
TRIM54-201ENST00000296098 LEAP2Q969E1 77 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 CCL13Q99616 98 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 GAB2Q9UQC2 676 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 DPRXA6NFQ7 191 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 H3BQ15 152 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 BCL2P10415 239 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 FGF7P21781 194 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 RAB13P51153 203 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 BSPH1Q075Z2 132 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 ADIPOQQ15848 244 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 TEX36Q5VZQ5 186 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 TCF23Q7RTU1 214 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 FAM216BQ8N7L0 139 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 ZNF436-AS1Q8NC38 126 aaPredicted RBP19.8■□□□□ 0.76
TRIM54-201ENST00000296098 EGLN1Q9GZT9 426 aa19.8■□□□□ 0.76
TRIM54-201ENST00000296098 MAP1LC3B2A6NCE7 125 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 IFNA17P01571 189 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 THBDP07204 575 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 FGF8P55075 233 aaPredicted RBP19.79■□□□□ 0.76
TRIM54-201ENST00000296098 UTF1Q5T230 341 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 OR10G4Q8NGN3 311 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 OR4A16Q8NH70 328 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 ISOC2Q96AB3 205 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 DIRC2Q96SL1 478 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 MAP1LC3BQ9GZQ8 125 aa19.79■□□□□ 0.76
TRIM54-201ENST00000296098 SAV1Q9H4B6 383 aaPredicted RBP19.79■□□□□ 0.76
TRIM54-201ENST00000296098 ZFP92A6NM28 416 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 LY86O95711 162 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 OR4A8P0C604 315 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 TNFRSF1AP19438 455 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 RPS16P62249 146 aaKnown RBP19.78■□□□□ 0.76
TRIM54-201ENST00000296098 VWC2Q2TAL6 325 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 CT45A1Q5HYN5 189 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 TGIF2LYQ8IUE0 185 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 CT45A3Q8NHU0 189 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 DDB2Q92466 427 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 SCNM1Q9BWG6 230 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 CISD1Q9NZ45 108 aaKnown RBP19.78■□□□□ 0.76
TRIM54-201ENST00000296098 LAMA5O15230 3695 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 SAA2-SAA4A0A096LPE2 208 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 A0A1W2PPH5 198 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 K7ENP7 123 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 MT-ND4LP03901 98 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 SAA2P0DJI9 122 aaPredicted RBP19.78■□□□□ 0.76
TRIM54-201ENST00000296098 NQO2P16083 231 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 SPCS3P61009 180 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 GNB2P62879 340 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 CCL8P80075 99 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 SSX8Q7RTT4 187 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 ZNF429Q86V71 674 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 OR4S2Q8NH73 311 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 DCAF16Q9NXF7 216 aa19.78■□□□□ 0.76
TRIM54-201ENST00000296098 DYSFO75923 2080 aa19.77■□□□□ 0.76
TRIM54-201ENST00000296098 PLCE1Q9P212 2302 aa19.77■□□□□ 0.76
TRIM54-201ENST00000296098 A0A1W2PPE3 182 aa19.77■□□□□ 0.76
TRIM54-201ENST00000296098 ZNF729A6NN14 1252 aaPredicted RBP19.77■□□□□ 0.76
TRIM54-201ENST00000296098 C15orf62A8K5M9 175 aa19.77■□□□□ 0.76
TRIM54-201ENST00000296098 HNF4GQ14541 408 aa19.77■□□□□ 0.76
TRIM54-201ENST00000296098 PRR30Q53SZ7 412 aaPredicted RBP19.77■□□□□ 0.76
TRIM54-201ENST00000296098 ACSM6Q6P461 480 aa19.77■□□□□ 0.76
TRIM54-201ENST00000296098 SNRNP40Q96DI7 357 aaKnown RBP19.77■□□□□ 0.76
TRIM54-201ENST00000296098 IDI2-AS1Q9NZ38 188 aa19.77■□□□□ 0.76
TRIM54-201ENST00000296098 A0A1W2PPE2 198 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 NKX6-3A6NJ46 265 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 C17orf100A8MU93 164 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 TFF3Q07654 80 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 C1orf229Q6ZS94 237 aaPredicted RBP19.76■□□□□ 0.75
TRIM54-201ENST00000296098 VKORC1L1Q8N0U8 176 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 RAB39BQ96DA2 213 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 TMEM140Q9NV12 185 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 RP1L1Q8IWN7 2480 aaPredicted RBP19.76■□□□□ 0.75
TRIM54-201ENST00000296098 HCFC1P51610 2035 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 IGKV1D-33P01593 117 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 IGKV1-33P01594 117 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 TMEM30BQ3MIR4 351 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 ZNF439Q8NDP4 499 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 OR52E5Q8NH55 327 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 NIPSNAP3BQ9BS92 247 aa19.76■□□□□ 0.75
TRIM54-201ENST00000296098 IFNA1P01562 189 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 ARG1P05089 322 aa19.75■□□□□ 0.75
TRIM54-201ENST00000296098 THBS3P49746 956 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms