RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 CDC34P49427 236 aaPredicted RBP11.73□□□□□ -0.53
USH1C-201ENST00000005226 PPP1CBP62140 327 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 PAX5Q02548 391 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 LINC01551Q86U37 167 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 LURAP1Q96LR2 239 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 C2orf88Q9BSF0 95 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 CBLN4Q9NTU7 201 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 FOXJ2Q9P0K8 574 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 PIGBOS1A0A0B4J2F0 54 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 RNF212BA8MTL3 300 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 CD82P27701 267 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 GCH1P30793 250 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 MPV17P39210 176 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 VKORC1L1Q8N0U8 176 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 ANAPC16Q96DE5 110 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 MANBALQ9NQG1 85 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 TRAPPC1Q9Y5R8 145 aa11.73□□□□□ -0.53
USH1C-201ENST00000005226 GRIFINA4D1Z8 144 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 THBS3P49746 956 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 CNN1P51911 297 aaKnown RBP11.72□□□□□ -0.53
USH1C-201ENST00000005226 PSG7Q13046 419 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 SLC10A1Q14973 349 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 ZNF146Q15072 292 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 Q8N7P7 452 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 TMEM18Q96B42 140 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 ACY3Q96HD9 319 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 OBP2BQ9NPH6 170 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 PSG11Q9UQ72 335 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 RBFOX2O43251 390 aaKnown RBP eCLIP11.72□□□□□ -0.53
USH1C-201ENST00000005226 SMPD2O60906 423 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 LYZL6O75951 148 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 GCGP01275 180 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 PDLIM4P50479 330 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 ATP6V1FQ16864 119 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 PRAMEF6Q5VXH4 476 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 COQ2Q96H96 371 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 POLDIP2Q9Y2S7 368 aa11.72□□□□□ -0.53
USH1C-201ENST00000005226 TMEM30CPA0ZSE6 113 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 C15orf62A8K5M9 175 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 TCAPO15273 167 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 MBP02144 154 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 OR9G9P0C7N8 305 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 G0S2P27469 103 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 EIF4EBP1Q13541 118 aaPredicted RBP11.71□□□□□ -0.53
USH1C-201ENST00000005226 TBC1D28Q2M2D7 210 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 GCNT2Q8N0V5 402 aa11.71□□□□□ -0.53
USH1C-201ENST00000005226 NOL4LQ96MY1 436 aaPredicted RBP11.71□□□□□ -0.53
USH1C-201ENST00000005226 TRBV20OR9-2A0A075B6H5 130 aa11.71□□□□□ -0.54
USH1C-201ENST00000005226 C9orf172C9J069 976 aa11.71□□□□□ -0.54
USH1C-201ENST00000005226 MEOX1P50221 254 aa11.71□□□□□ -0.54
USH1C-201ENST00000005226 FBXW9Q5XUX1 488 aa11.71□□□□□ -0.54
USH1C-201ENST00000005226 GBGT1Q8N5D6 347 aa11.71□□□□□ -0.54
USH1C-201ENST00000005226 CISD2Q8N5K1 135 aaKnown RBP11.71□□□□□ -0.54
USH1C-201ENST00000005226 IMMP2LQ96T52 175 aa11.71□□□□□ -0.54
USH1C-201ENST00000005226 AGFG2O95081 481 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 RPL15P61313 204 aaKnown RBP11.7□□□□□ -0.54
USH1C-201ENST00000005226 OR13A1Q8NGR1 328 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 SGMS2Q8NHU3 365 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 NINJ1Q92982 152 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 FKBP11Q9NYL4 201 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 A0A1W2PNU3 283 aaPredicted RBP11.7□□□□□ -0.54
USH1C-201ENST00000005226 FRMD6-AS1P0C7T7 363 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 SRP14P37108 136 aaKnown RBP11.7□□□□□ -0.54
USH1C-201ENST00000005226 TGFBR3Q03167 851 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 CYB5R2Q6BCY4 276 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 KCNIP4Q6PIL6 250 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 SNHG12Q9BXW3 62 aa11.7□□□□□ -0.54
USH1C-201ENST00000005226 TNRC18O15417 2968 aaPredicted RBP11.69□□□□□ -0.54
USH1C-201ENST00000005226 MARCH11A6NNE9 402 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 RRHO14718 337 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 MLNRO43193 412 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 CLDN14O95500 239 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 CASP6P55212 293 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 CATR1Q13166 79 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 EDDM3AQ14507 147 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 ACOT6Q3I5F7 207 aaPredicted RBP11.69□□□□□ -0.54
USH1C-201ENST00000005226 ZNF766Q5HY98 468 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 RNFT1Q5M7Z0 435 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 C11orf53Q8IXP5 236 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 IL17BQ9UHF5 180 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 A0A1W2PPV4 95 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 AQP7O14520 342 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 WISP2O76076 250 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 CD1BP29016 333 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 ZNF124Q15973 351 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 TDRG1Q3Y452 100 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 ATP1A1-AS1Q5TC04 95 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 MIC13Q5XKP0 118 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 Q8IYB0 196 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 MSL2Q9HCI7 577 aa11.69□□□□□ -0.54
USH1C-201ENST00000005226 TRAV3A0A0B4J244 114 aa11.68□□□□□ -0.54
USH1C-201ENST00000005226 ZNF705FA8MVS1 300 aaPredicted RBP11.68□□□□□ -0.54
USH1C-201ENST00000005226 RAB29O14966 203 aa11.68□□□□□ -0.54
USH1C-201ENST00000005226 FCGR3BO75015 233 aa11.68□□□□□ -0.54
USH1C-201ENST00000005226 PROP1O75360 226 aa11.68□□□□□ -0.54
USH1C-201ENST00000005226 TYMSP04818 313 aa11.68□□□□□ -0.54
USH1C-201ENST00000005226 ZNF705DP0CH99 300 aaPredicted RBP11.68□□□□□ -0.54
USH1C-201ENST00000005226 ZNF705BP0CI00 300 aaPredicted RBP11.68□□□□□ -0.54
USH1C-201ENST00000005226 ARL14EPLP0DKL9 152 aa11.68□□□□□ -0.54
USH1C-201ENST00000005226 FOXF2Q12947 444 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms