RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 SEC22AQ96IW7 307 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 C2orf50Q96LR7 162 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 PDCD10Q9BUL8 212 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 NMES1Q9C002 83 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 SIRPDQ9H106 197 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 RANBP3Q9H6Z4 567 aaPredicted RBP9.59□□□□□ -0.87
CLN6-223ENST00000637823 MMP26Q9NRE1 261 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 AMMECR1Q9Y4X0 333 aaPredicted RBP9.59□□□□□ -0.87
CLN6-223ENST00000637823 INSIG2Q9Y5U4 225 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 POLQO75417 2590 aa9.59□□□□□ -0.87
CLN6-223ENST00000637823 BOLA2-SMG1P6H3BVE0 249 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 RBFOX2O43251 390 aaKnown RBP eCLIP9.58□□□□□ -0.88
CLN6-223ENST00000637823 ATG12O94817 140 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 TOX4O94842 621 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 VDAC1P21796 283 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 BRWD1-AS2P59051 145 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 PAX8Q06710 450 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 HLA-DRB5Q30154 266 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 ZFP69Q49AA0 526 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 VMO1Q7Z5L0 202 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 SLC35G3Q8N808 338 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 DRAXINQ8NBI3 349 aaPredicted RBP9.58□□□□□ -0.88
CLN6-223ENST00000637823 OR2T35Q8NGX2 323 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 DDB2Q92466 427 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 LSM10Q969L4 123 aaKnown RBP9.58□□□□□ -0.88
CLN6-223ENST00000637823 OR10C1Q96KK4 312 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 ZNRD1Q9P1U0 126 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 MAP1AP78559 2803 aaPredicted RBP9.58□□□□□ -0.88
CLN6-223ENST00000637823 CR1P17927 2039 aa9.58□□□□□ -0.88
CLN6-223ENST00000637823 B4DSR2 109 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 BUB1B-PAK6H3BSN5 160 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 IGKV1-39P01597 117 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 IGKV1D-39P04432 117 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 CT45A6P0DMU7 189 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 CT45A5P0DMU8 189 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 CT45A7P0DMV0 189 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 RRASP10301 218 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 MMP9P14780 707 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 COX7A1P24310 79 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 DLX1P56177 255 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 LINC00205P59089 165 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 LOXL1Q08397 574 aaPredicted RBP9.57□□□□□ -0.88
CLN6-223ENST00000637823 FGL1Q08830 312 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 IAH1Q2TAA2 248 aaPredicted RBP9.57□□□□□ -0.88
CLN6-223ENST00000637823 Q5PR19 223 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 HCP5Q6MZN7 132 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 NOXA1Q86UR1 476 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 WDR89Q96FK6 387 aaPredicted RBP9.57□□□□□ -0.88
CLN6-223ENST00000637823 SPIN2AQ99865 258 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 SPIN2BQ9BPZ2 258 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 REG4Q9BYZ8 158 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 PLEKHA2Q9HB19 425 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 SIRT7Q9NRC8 400 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 COMMD9Q9P000 198 aa9.57□□□□□ -0.88
CLN6-223ENST00000637823 A0A096LNT2 108 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 TRAV20A0A0B4J274 112 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 CYSRT1A8MQ03 144 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 MPTX1A8MV57 137 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 LY6LH3BQJ8 138 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 SMLR1H3BR10 107 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 RAMP3O60896 148 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 FCGR3BO75015 233 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 HPRT1P00492 218 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 GAPDHP04406 335 aaKnown RBP9.56□□□□□ -0.88
CLN6-223ENST00000637823 ARG1P05089 322 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 MSMBP08118 114 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 SLC25A6P12236 298 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 CEACAM3P40198 252 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 EIF2B2P49770 351 aaKnown RBP9.56□□□□□ -0.88
CLN6-223ENST00000637823 ZNF816Q0VGE8 651 aaPredicted RBP9.56□□□□□ -0.88
CLN6-223ENST00000637823 IL15RAQ13261 267 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 NMSQ5H8A3 153 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 OR2B11Q5JQS5 317 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 DHRS7BQ6IAN0 325 aaPredicted RBP9.56□□□□□ -0.88
CLN6-223ENST00000637823 TGIF2LXQ8IUE1 241 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 FAM219AQ8IW50 185 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 ZNF383Q8NA42 475 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 ZBTB8BQ8NAP8 495 aaPredicted RBP9.56□□□□□ -0.88
CLN6-223ENST00000637823 OR4P4Q8NGL7 312 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 OR4S2Q8NH73 311 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 RRNAD1Q96FB5 475 aaKnown RBP9.56□□□□□ -0.88
CLN6-223ENST00000637823 HYLS1Q96M11 299 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 PCGF1Q9BSM1 259 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 LPAR2Q9HBW0 351 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 GSKIPQ9P0R6 139 aa9.56□□□□□ -0.88
CLN6-223ENST00000637823 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.55□□□□□ -0.881e-6■■□□□ 12.3
CLN6-223ENST00000637823 A0A1B0GU03 582 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 ODF3BA8MYP8 253 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 LEUTXA8MZ59 168 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 RNASEK-C17orf49H0YIS7 233 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 TXNL1O43396 289 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 S1PR2O95136 353 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 IGKV1-5P01602 117 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 APOA2P02652 100 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 HOXB4P17483 251 aaPredicted RBP9.55□□□□□ -0.88
CLN6-223ENST00000637823 EPHA1P21709 976 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 GATA3P23771 443 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 PSMB6P28072 239 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 HTR1DP28221 377 aa9.55□□□□□ -0.88
CLN6-223ENST00000637823 MC5RP33032 325 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms