RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SLC35D1Q9NTN3 355 aa9.1□□□□□ -0.95
CLN3-257ENST00000637110 DNAH9Q9NYC9 4486 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 RYR2Q92736 4967 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 A0A087WXM4 84 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 A0A1W2PN81 502 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 TMEM235A6NFC5 223 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 IGHG4P01861 327 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 CHRNA7P36544 502 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 CDX1P47902 265 aaPredicted RBP9.09□□□□□ -0.95
CLN3-257ENST00000637110 CX3CL1P78423 397 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 PITPNAQ00169 270 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 TMEM267Q0VDI3 215 aaPredicted RBP9.09□□□□□ -0.95
CLN3-257ENST00000637110 PSG5Q15238 335 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 TIMM50Q3ZCQ8 353 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 HACD4Q5VWC8 232 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 ZNF660Q6AZW8 331 aaPredicted RBP9.09□□□□□ -0.95
CLN3-257ENST00000637110 ETV3LQ6ZN32 361 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 PDPNQ86YL7 162 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.09□□□□□ -0.95
CLN3-257ENST00000637110 TSPAN14Q8NG11 270 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 NUDCD2Q8WVJ2 157 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 OR5B12Q96R08 314 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 RNF5Q99942 180 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 MCRIP2Q9BUT9 160 aaKnown RBP9.09□□□□□ -0.95
CLN3-257ENST00000637110 SDHAF2Q9NX18 166 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 RHBDL2Q9NX52 303 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 U3KQK5 164 aa9.09□□□□□ -0.95
CLN3-257ENST00000637110 TENM2Q9NT68 2774 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 TRAV18A0A075B6X5 111 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 IGKV1D-8A0A087WSZ0 117 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 WI2-2373I1.2A0A1W2PRP0 233 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 FCN1O00602 326 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 SLC25A17O43808 307 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 AIREO43918 545 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 PROP1O75360 226 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 TNFAIP8O95379 198 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 CNIH1O95406 144 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 CA2P00918 260 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 IGKV1-16P04430 117 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 DTYMKP23919 212 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 CD40LGP29965 261 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 HOXD3P31249 432 aaPredicted RBP9.08□□□□□ -0.96
CLN3-257ENST00000637110 LSM3P62310 102 aaKnown RBP9.08□□□□□ -0.96
CLN3-257ENST00000637110 GNB1P62873 340 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 CFHR3Q02985 330 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 SRSF7Q16629 238 aaKnown RBP eCLIP9.08□□□□□ -0.96
CLN3-257ENST00000637110 UNQ5815/PRO19632Q6UWF5 114 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 PPP1R27Q86WC6 154 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 BVESQ8NE79 360 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 OR5H6Q8NGV6 325 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 RAX2Q96IS3 184 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 FAM103A1Q9BTL3 118 aaKnown RBP9.08□□□□□ -0.96
CLN3-257ENST00000637110 KLK15Q9H2R5 256 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 ZNF580Q9UK33 172 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 ETV7Q9Y603 341 aa9.08□□□□□ -0.96
CLN3-257ENST00000637110 SHOXO15266 292 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 DIRAS3O95661 229 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 CTXN2P0C2S0 81 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 NFYAP23511 347 aaPredicted RBP9.07□□□□□ -0.96
CLN3-257ENST00000637110 PSMB8P28062 276 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 PPIFP30405 207 aaKnown RBP9.07□□□□□ -0.96
CLN3-257ENST00000637110 RAB9AP51151 201 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 ARPC4P59998 168 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 RTL8BQ17RB0 113 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 ZNF260Q3ZCT1 412 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 Q6ZS49 121 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 H1FOOQ8IZA3 346 aaPredicted RBP9.07□□□□□ -0.96
CLN3-257ENST00000637110 OR11H1Q8NG94 326 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 OR5M8Q8NGP6 311 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 GRPEL2Q8TAA5 225 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 C4orf3Q8WVX3 66 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 HARBI1Q96MB7 349 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 P2RX4Q99571 388 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 DCUN1D5Q9BTE7 237 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 TOLLIPQ9H0E2 274 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 DCSTAMPQ9H295 470 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 DIABLOQ9NR28 239 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 ZNF355PQ9NSJ1 428 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 GAB2Q9UQC2 676 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 FOXA2Q9Y261 457 aaPredicted RBP9.07□□□□□ -0.96
CLN3-257ENST00000637110 VSIG4Q9Y279 399 aa9.07□□□□□ -0.96
CLN3-257ENST00000637110 TUSC2O75896 110 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 SPDEFO95238 335 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 FCER2P06734 321 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 RRASP10301 218 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 TGFBR1P36897 503 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 LGALS7P47929 136 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 LUMP51884 338 aaPredicted RBP9.06□□□□□ -0.96
CLN3-257ENST00000637110 NDPQ00604 133 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 TAGLNQ01995 201 aaKnown RBP9.06□□□□□ -0.96
CLN3-257ENST00000637110 FXYD3Q14802 87 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 ACTBL2Q562R1 376 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 CNIH2Q6PI25 160 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 ZNF562Q6V9R5 426 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 ZNF491Q8N8L2 437 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 RNF152Q8N8N0 203 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 LFNGQ8NES3 379 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 OR1N2Q8NGR9 330 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 CASTOR1Q8WTX7 329 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 ARPC1AQ92747 370 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms