RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 BEND2Q8NDZ0 799 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 RNASE11Q8TAA1 199 aaKnown RBP8.67□□□□□ -1.02
CLN3-248ENST00000636355 TMEM186Q96B77 213 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 ZNF251Q9BRH9 671 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 PIMREGQ9BSJ6 248 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 PCGF1Q9BSM1 259 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 TMEM133Q9H2Q1 129 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 POLR3KQ9Y2Y1 108 aaPredicted RBP8.67□□□□□ -1.02
CLN3-248ENST00000636355 NSG2Q9Y328 171 aa8.67□□□□□ -1.02
CLN3-248ENST00000636355 ARID1AO14497 2285 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 USP9YO00507 2555 aaPredicted RBP8.66□□□□□ -1.02
CLN3-248ENST00000636355 K7EPK0 472 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 SCAF4O95104 1147 aaKnown RBP8.66□□□□□ -1.02
CLN3-248ENST00000636355 IGKV1-39P01597 117 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 IGHV4-39P01824 125 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 MBPP02686 304 aaPredicted RBP8.66□□□□□ -1.02
CLN3-248ENST00000636355 IGKV1D-39P04432 117 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 FGF2P09038 288 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 ZNF16P17020 682 aaPredicted RBP8.66□□□□□ -1.02
CLN3-248ENST00000636355 CXCL2P19875 107 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 SSTR2P30874 369 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 RAB13P51153 203 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 ZNF134P52741 427 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 S100A10P60903 97 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 POU2AF1Q16633 256 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 RTL8BQ17RB0 113 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 DCUN1D4Q92564 292 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 MARVELD3Q96A59 401 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 GSX2Q9BZM3 304 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 ARL6Q9H0F7 186 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 GSKIPQ9P0R6 139 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 RNF150Q9ULK6 438 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 PAIP2BQ9ULR5 123 aaKnown RBP8.66□□□□□ -1.02
CLN3-248ENST00000636355 KPTNQ9Y664 436 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 LRBAP50851 2863 aa8.66□□□□□ -1.02
CLN3-248ENST00000636355 AKAP6Q13023 2319 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 LOC105371242A0A075B767 164 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 KANTRA0A1W2PQU2 76 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 MEX3AA1L020 520 aaKnown RBP8.65□□□□□ -1.02
CLN3-248ENST00000636355 MARCH11A6NNE9 402 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 LINC00473A8K010 186 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 C22orf46C9J442 243 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 J3QR06 171 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 TOR1AO14656 332 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 TAAR5O14804 337 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 SLC31A2O15432 143 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 BCL2L11O43521 198 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 MMP23AO75900 390 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 LY6HO94772 140 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 IGKV1-5P01602 117 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 APOA2P02652 100 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 NQO2P16083 231 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 LPAR6P43657 344 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 P2RY1P47900 373 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 TAS2R30P59541 319 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 ERVK-16P61578 105 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 RPL30P62888 115 aaKnown RBP8.65□□□□□ -1.02
CLN3-248ENST00000636355 UBA52P62987 128 aaKnown RBP8.65□□□□□ -1.02
CLN3-248ENST00000636355 OPCMLQ14982 345 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 GPR157Q5UAW9 335 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 CLEC2AQ6UVW9 174 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 BTNL3Q6UXE8 466 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 TMUB2Q71RG4 321 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 SLC51BQ86UW2 128 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 FOXRED2Q8IWF2 684 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 LYG1Q8N1E2 194 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 C11orf42Q8N5U0 333 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 OR10X1Q8NGY0 326 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 RAB40CQ96S21 281 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 GPHA2Q96T91 129 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 RNF126Q9BV68 326 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 CLEC7AQ9BXN2 247 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 PLSCR3Q9NRY6 295 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 ITGB1BP2Q9UKP3 347 aa8.65□□□□□ -1.02
CLN3-248ENST00000636355 RCL1Q9Y2P8 373 aaKnown RBP8.65□□□□□ -1.02
CLN3-248ENST00000636355 UNC79Q9P2D8 2635 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 IGHV2-26A0A0B4J1V2 119 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 KIAA1324LA8MWY0 1029 aaPredicted RBP8.64□□□□□ -1.03
CLN3-248ENST00000636355 H0YIZ8 118 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 RAMP3O60896 148 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 PROP1O75360 226 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 MED6O75586 246 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 FOXH1O75593 365 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 S1PR2O95136 353 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 HRASP01112 189 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 IFNA7P01567 189 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 IGLV1-47P01700 117 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 GNG10P50151 68 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 PRRX1P54821 245 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 BRWD1-AS2P59051 145 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 EIF5AP63241 154 aaKnown RBP8.64□□□□□ -1.03
CLN3-248ENST00000636355 IFITM2Q01629 132 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 ID3Q02535 119 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 BAXQ07812 192 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 HLA-DRB5Q30154 266 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 RPL39P5Q59GN2 51 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 NCR3LG1Q68D85 454 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 FAM53AQ6NSI3 398 aaPredicted RBP8.64□□□□□ -1.03
CLN3-248ENST00000636355 PDPNQ86YL7 162 aa8.64□□□□□ -1.03
CLN3-248ENST00000636355 ZNF525Q8N782 197 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms