RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZNF107Q9UII5 783 aaPredicted RBP16.37■□□□□ 0.21
CLN3-240ENST00000631023 ADAM30Q9UKF2 790 aa16.37■□□□□ 0.21
CLN3-240ENST00000631023 H3BMQ9 156 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 SULT1C2O00338 296 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 TPPPO94811 219 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 CSF1P09603 554 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 RRASP10301 218 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 RTL8BQ17RB0 113 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 DYNC2LI1Q8TCX1 351 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 GPX8Q8TED1 209 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 CITED2Q99967 270 aaPredicted RBP16.36■□□□□ 0.21
CLN3-240ENST00000631023 EXTL2Q9UBQ6 330 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 ANAPC10Q9UM13 185 aa16.36■□□□□ 0.21
CLN3-240ENST00000631023 CCDC160A6NGH7 325 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 RRHO14718 337 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 HLA-DRB1P01911 266 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 IGKV1-16P04430 117 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 NAT1P18440 290 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 PLGLAQ15195 96 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 TREML4Q6UXN2 200 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 NDUFA11Q86Y39 141 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 STPG2Q8N412 459 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 CEPT1Q9Y6K0 416 aa16.35■□□□□ 0.21
CLN3-240ENST00000631023 IGKV1D-13A0A0B4J2D9 117 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 LINC01548A6NM66 108 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 PPYP01298 95 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 OPN1MWP04001 364 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 OPN1MW2P0DN77 364 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 OPN1MW3P0DN78 364 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 IGKV1-13P0DP09 117 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 DUTP33316 252 aaKnown RBP16.34■□□□□ 0.21
CLN3-240ENST00000631023 LGALS7P47929 136 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 CD83Q01151 205 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 OR5H2Q8NGV7 314 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 GIMAP1Q8WWP7 306 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 C5orf30Q96GV9 206 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 HSPB9Q9BQS6 159 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 EHFQ9NZC4 300 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 LINC00527Q9UJ94 153 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 RBMX2Q9Y388 322 aaKnown RBP16.34■□□□□ 0.21
CLN3-240ENST00000631023 SPDEFO95238 335 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 AADACP22760 399 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 NSUN5P1Q3KNT7 163 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 ZNF329Q86UD4 541 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 COMMD1Q8N668 190 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 HSD17B10Q99714 261 aaKnown RBP16.34■□□□□ 0.21
CLN3-240ENST00000631023 MMP27Q9H306 513 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 FBXL15Q9H469 300 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 PRELID3BQ9Y3B1 194 aa16.34■□□□□ 0.21
CLN3-240ENST00000631023 TNCP24821 2201 aa16.33■□□□□ 0.21
CLN3-240ENST00000631023 TCRBV4S1A1TA0A5B7 111 aa16.33■□□□□ 0.2
CLN3-240ENST00000631023 CTDSP2O14595 271 aa16.33■□□□□ 0.2
CLN3-240ENST00000631023 OVCH2Q7RTZ1 564 aa16.33■□□□□ 0.2
CLN3-240ENST00000631023 BVESQ8NE79 360 aa16.33■□□□□ 0.2
CLN3-240ENST00000631023 SECTM1Q8WVN6 248 aa16.33■□□□□ 0.2
CLN3-240ENST00000631023 METTL1Q9UBP6 276 aaKnown RBP16.33■□□□□ 0.2
CLN3-240ENST00000631023 ZNF580Q9UK33 172 aa16.33■□□□□ 0.2
CLN3-240ENST00000631023 VWFP04275 2813 aa16.33■□□□□ 0.2
CLN3-240ENST00000631023 NBEAL1Q6ZS30 2694 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 PMP2P02689 132 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 IGF1P05019 195 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 RCVRNP35243 200 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 RFX2P48378 723 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 HERV-K104P61576 105 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 DYRK1AQ13627 763 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 PSG5Q15238 335 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 HIST2H2BDQ6DRA6 164 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 C10orf99Q6UWK7 81 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 DHRS11Q6UWP2 260 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 DDB2Q92466 427 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 OR51J1Q9H342 316 aa16.32■□□□□ 0.2
CLN3-240ENST00000631023 TSSC4Q9Y5U2 329 aaPredicted RBP16.32■□□□□ 0.2
CLN3-240ENST00000631023 FBN3Q75N90 2809 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 LINC00473A8K010 186 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 SHOXO15266 292 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 IGLV2-14P01704 120 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 VDAC1P21796 283 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 HLA-DMAP28067 261 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 FXYD4P59646 89 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 MSMO1Q15800 293 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 TMEM177Q53S58 311 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 TEX38Q6PEX7 206 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 KCTD9Q7L273 389 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 LYSMD2Q8IV50 215 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 LAX1Q8IWV1 398 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 ZBTB34Q8NCN2 500 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 BORCS5Q969J3 196 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 HARBI1Q96MB7 349 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 C6orf62Q9GZU0 229 aaPredicted RBP16.31■□□□□ 0.2
CLN3-240ENST00000631023 SLC5A7Q9GZV3 580 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 MIXL1Q9H2W2 232 aa16.31■□□□□ 0.2
CLN3-240ENST00000631023 IGHV7-81A0A0B4J1V7 117 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 TSPAN15O95858 294 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 TCTEX1D4Q5JR98 221 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 KHDC1LQ5JSQ8 128 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 ZNF660Q6AZW8 331 aaPredicted RBP16.3■□□□□ 0.2
CLN3-240ENST00000631023 ZNF66Q6ZN08 573 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 OR4F17Q8NGA8 305 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 OR6F1Q8NGZ6 308 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 OR4F4Q96R69 305 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms