RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 AK3Q9UIJ7 227 aa14.84□□□□□ -0.03
CDX1-202ENST00000616154 TRAV18A0A075B6X5 111 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 ZNF736B4DX44 427 aaPredicted RBP14.83□□□□□ -0.04
CDX1-202ENST00000616154 TALDO1P37837 337 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 CFHR3Q02985 330 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 DEFB136Q30KP8 78 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 LCNL1Q6ZST4 164 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 FAM71E2Q8N5Q1 922 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 OR5M8Q8NGP6 311 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 ZNF580Q9UK33 172 aa14.83□□□□□ -0.04
CDX1-202ENST00000616154 CTDSPLO15194 276 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 NHLRC4P0CG21 123 aaPredicted RBP14.82□□□□□ -0.04
CDX1-202ENST00000616154 GNB3P16520 340 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 LUMP51884 338 aaPredicted RBP14.82□□□□□ -0.04
CDX1-202ENST00000616154 HLA-DRB3P79483 266 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 ZNF79Q15937 498 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 CDNFQ49AH0 187 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 HACD4Q5VWC8 232 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 OR2AK2Q8NG84 335 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 ABHD1Q96SE0 405 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 NABP2Q9BQ15 211 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 HSPB9Q9BQS6 159 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 HDHD3Q9BSH5 251 aaPredicted RBP14.82□□□□□ -0.04
CDX1-202ENST00000616154 Q9N2K0 584 aa14.82□□□□□ -0.04
CDX1-202ENST00000616154 FABP12A6NFH5 140 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 IGHG4P01861 327 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 ZNF45Q02386 682 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 SPANXN2Q5MJ10 180 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 C9orf66Q5T8R8 295 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 PYHIN1Q6K0P9 492 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 C15orf40Q8WUR7 153 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 ZNF251Q9BRH9 671 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 AGMATQ9BSE5 352 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 GHITMQ9H3K2 345 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 CHMP1AQ9HD42 196 aaPredicted RBP14.81□□□□□ -0.04
CDX1-202ENST00000616154 SLC23A1Q9UHI7 598 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 LSM4Q9Y4Z0 139 aaKnown RBP14.81□□□□□ -0.04
CDX1-202ENST00000616154 STAB2Q8WWQ8 2551 aa14.81□□□□□ -0.04
CDX1-202ENST00000616154 SAA2-SAA4A0A096LPE2 208 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 TMEM235A6NFC5 223 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 IGF1P05019 195 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 SAA2P0DJI9 122 aaPredicted RBP14.8□□□□□ -0.04
CDX1-202ENST00000616154 VDAC1P21796 283 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 F2RL1P55085 397 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 C4orf3Q8WVX3 66 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 S100ZQ8WXG8 99 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 MRPL20Q9BYC9 149 aaKnown RBP14.8□□□□□ -0.04
CDX1-202ENST00000616154 TOLLIPQ9H0E2 274 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 PIPOXQ9P0Z9 390 aa14.8□□□□□ -0.04
CDX1-202ENST00000616154 ELF5Q9UKW6 265 aaPredicted RBP14.8□□□□□ -0.04
CDX1-202ENST00000616154 SSX5O60225 188 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 DIRAS3O95661 229 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 PSMB8P28062 276 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 MRPS10P82664 201 aaKnown RBP14.79□□□□□ -0.04
CDX1-202ENST00000616154 PITPNAQ00169 270 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 FHL3Q13643 280 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 IL1F10Q8WWZ1 152 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 CMSS1Q9BQ75 279 aaKnown RBP14.79□□□□□ -0.04
CDX1-202ENST00000616154 SCPEP1Q9HB40 452 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 ANAPC10Q9UM13 185 aa14.79□□□□□ -0.04
CDX1-202ENST00000616154 SEC14L6B5MCN3 397 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 SULT1C2O00338 296 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 RAB29O14966 203 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 GSTZ1O43708 216 aaPredicted RBP14.78□□□□□ -0.04
CDX1-202ENST00000616154 OR5H8P0DN80 308 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 ZBTB25P24278 435 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 OR3A3P47888 321 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 FAM131AQ6UXB0 335 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 MYOZ3Q8TDC0 251 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 GPX8Q8TED1 209 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 EDARADDQ8WWZ3 215 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 PRR25Q96S07 402 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 SRRQ9GZT4 340 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 PARP12Q9H0J9 701 aaKnown RBP14.78□□□□□ -0.04
CDX1-202ENST00000616154 U3KQK5 164 aa14.78□□□□□ -0.04
CDX1-202ENST00000616154 SORL1Q92673 2214 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 IGKV1-6A0A0C4DH72 117 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 ST8SIA5O15466 376 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 SCTP09683 121 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 PTHLHP12272 177 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 DTYMKP23919 212 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 IL18Q14116 193 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 SRSF7Q16629 238 aaKnown RBP eCLIP14.77□□□□□ -0.04
CDX1-202ENST00000616154 SETD6Q8TBK2 473 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 SMIM4Q8WVI0 70 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 RBMXL1Q96E39 390 aaKnown RBP14.77□□□□□ -0.04
CDX1-202ENST00000616154 SDHCQ99643 169 aaPredicted RBP14.77□□□□□ -0.04
CDX1-202ENST00000616154 OR1A1Q9P1Q5 309 aa14.77□□□□□ -0.04
CDX1-202ENST00000616154 ZNF107Q9UII5 783 aaPredicted RBP14.77□□□□□ -0.04
CDX1-202ENST00000616154 MRPS7Q9Y2R9 242 aaKnown RBP14.77□□□□□ -0.04
CDX1-202ENST00000616154 TRDCB7Z8K6 153 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 GABARAPH6UMI1 98 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 NDUFA3O95167 84 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 PRSS3P35030 304 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 ECI1P42126 302 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 ACTBP60709 375 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 Q6ZS49 121 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 SNX29P2Q8IUI4 249 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 GDPD1Q8N9F7 314 aa14.76□□□□□ -0.05
CDX1-202ENST00000616154 NPBQ8NG41 125 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms