RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 RAB24Q969Q5 203 aa11.82□□□□□ -0.52
COL6A1-207ENST00000612273 POM121Q96HA1 1249 aa11.82□□□□□ -0.52
COL6A1-207ENST00000612273 HIST1H2BLQ99880 126 aa11.82□□□□□ -0.52
COL6A1-207ENST00000612273 PRDM13Q9H4Q3 707 aa11.82□□□□□ -0.52
COL6A1-207ENST00000612273 NBASA2RRP1 2371 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 HBZP02008 142 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 PSMB3P49720 205 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 TMEM164Q5U3C3 297 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 FBXW9Q5XUX1 488 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 ZNF497Q6ZNH5 498 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 OR10P1Q8NGE3 313 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 OR10A7Q8NGE5 316 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 OR13D1Q8NGV5 346 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 IL22RA2Q969J5 263 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 OR5B12Q96R08 314 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 DERL1Q9BUN8 251 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 LINC00470Q9BZP3 86 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 TREM2Q9NZC2 230 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 TNCP24821 2201 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 IFNA1P01562 189 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 C1orf210Q8IVY1 113 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 LEAP2Q969E1 77 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 C5orf30Q96GV9 206 aa11.81□□□□□ -0.52
COL6A1-207ENST00000612273 XKRY2A2RUG3 117 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 ZNF729A6NN14 1252 aaPredicted RBP11.8□□□□□ -0.52
COL6A1-207ENST00000612273 PPP5D1E7EU14 171 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 Q6ZR03 302 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 H2BFWTQ7Z2G1 175 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 OR8G5Q8NG78 346 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 DTD1Q8TEA8 209 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 HINT2Q9BX68 163 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 PTBP3O95758 552 aaKnown RBP11.8□□□□□ -0.52
COL6A1-207ENST00000612273 B4E171 279 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 SP1P08047 785 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 CD33P20138 364 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 TSPAN7P41732 249 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 RPL23P62829 140 aaKnown RBP11.8□□□□□ -0.52
COL6A1-207ENST00000612273 SPRR3Q9UBC9 169 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 DUSP13Q9UII6 198 aa11.8□□□□□ -0.52
COL6A1-207ENST00000612273 A0A087X0M5 115 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 A0A1B0GX30 115 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 TNFSF15O95150 251 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 BCL2L2Q92843 193 aaPredicted RBP11.79□□□□□ -0.52
COL6A1-207ENST00000612273 TRIB1Q96RU8 372 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 GPR87Q9BY21 358 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 INTS1Q8N201 2190 aaKnown RBP11.79□□□□□ -0.52
COL6A1-207ENST00000612273 LNP1A1A4G5 178 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 LINC00473A8K010 186 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 YKT6O15498 198 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 SMPD2O60906 423 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 IFNA10P01566 189 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 HIST1H1BP16401 226 aaKnown RBP11.79□□□□□ -0.52
COL6A1-207ENST00000612273 MAS1LP35410 378 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 SRSF6Q13247 344 aaKnown RBP11.79□□□□□ -0.52
COL6A1-207ENST00000612273 LSM10Q969L4 123 aaKnown RBP11.79□□□□□ -0.52
COL6A1-207ENST00000612273 POLDIP2Q9Y2S7 368 aa11.79□□□□□ -0.52
COL6A1-207ENST00000612273 TRGV5A0A0B4J1U4 118 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 FCGR3BO75015 233 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 MPLP40238 635 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 ATP5G3P48201 142 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 SERF2P84101 59 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 VHLLQ6RSH7 139 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 OR13A1Q8NGR1 328 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 MBD3L1Q8WWY6 194 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 NAT8Q9UHE5 227 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 TIMM8AO60220 97 aaPredicted RBP11.78□□□□□ -0.52
COL6A1-207ENST00000612273 OPN1MWP04001 364 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 OPN1MW2P0DN77 364 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 OPN1MW3P0DN78 364 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 PNRC1Q12796 327 aaPredicted RBP11.78□□□□□ -0.52
COL6A1-207ENST00000612273 FAM78BQ5VT40 261 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 SP5Q6BEB4 398 aaPredicted RBP11.78□□□□□ -0.52
COL6A1-207ENST00000612273 KLF14Q8TD94 323 aaPredicted RBP11.78□□□□□ -0.52
COL6A1-207ENST00000612273 C14orf144Q96I85 54 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 GNG12Q9UBI6 72 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 IGHV3OR15-7A0A075B7D8 119 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.78□□□□□ -0.52
COL6A1-207ENST00000612273 SSMEM1Q8WWF3 244 aa11.78□□□□□ -0.52
COL6A1-207ENST00000612273 NANOS1Q8WY41 292 aaKnown RBP11.78□□□□□ -0.52
COL6A1-207ENST00000612273 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.78□□□□□ -0.52
COL6A1-207ENST00000612273 TRAV1-1A0A0B4J248 108 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 LRRC30A6NM36 301 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 NDUFB4O95168 129 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 SNRPCP09234 159 aaKnown RBP11.77□□□□□ -0.52
COL6A1-207ENST00000612273 COX5BP10606 129 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 SLC25A6P12236 298 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 PMS2P11Q13670 270 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 RNPS1Q15287 305 aaKnown RBP11.77□□□□□ -0.52
COL6A1-207ENST00000612273 MSMO1Q15800 293 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 OPA3Q9H6K4 179 aa11.77□□□□□ -0.52
COL6A1-207ENST00000612273 B4DEV8 164 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 C11orf94C9JXX5 98 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 KLRC4-KLRK1H3BQV0 150 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 GYPAP02724 150 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 IGHV1-2P23083 117 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 THBS3P49746 956 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 BRWD1-AS2P59051 145 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 GNB2P62879 340 aa11.77□□□□□ -0.53
COL6A1-207ENST00000612273 MRPL49Q13405 166 aaKnown RBP11.77□□□□□ -0.53
COL6A1-207ENST00000612273 NRN1LQ496H8 165 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms