RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MINOS1-NBL1R4GNA1 71 aa12.56□□□□□ -0.4
UPF1-206ENST00000598471 ATG12O94817 140 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 RRASP10301 218 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 RPL30P62888 115 aaKnown RBP12.55□□□□□ -0.4
UPF1-206ENST00000598471 RTL8BQ17RB0 113 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 ZNF695Q8IW36 515 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 PDZD9Q8IXQ8 264 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 SPAG16Q8N0X2 631 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 LRTM2Q8N967 370 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 DRAXINQ8NBI3 349 aaPredicted RBP12.55□□□□□ -0.4
UPF1-206ENST00000598471 GLYATL2Q8WU03 294 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 CHAC2Q8WUX2 184 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 IL22RA2Q969J5 263 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 ST6GALNAC6Q969X2 333 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 MGAT4CQ9UBM8 478 aa12.55□□□□□ -0.4
UPF1-206ENST00000598471 CREBBPQ92793 2442 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 ARHGAP32A7KAX9 2087 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 DUXBA0A1W2PPF3 345 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 LINC00473A8K010 186 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 OOSP1A8MZH6 123 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 RBFOX2O43251 390 aaKnown RBP eCLIP12.54□□□□□ -0.4
UPF1-206ENST00000598471 PROP1O75360 226 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 IFNA21P01568 189 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 SULT1A3P0DMM9 295 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 SULT1A4P0DMN0 295 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 REG1BP48304 166 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 ZNF816Q0VGE8 651 aaPredicted RBP12.54□□□□□ -0.4
UPF1-206ENST00000598471 FCN2Q15485 313 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 MIDNQ504T8 468 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 TPTE2P1Q5T6R2 138 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 GPR157Q5UAW9 335 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 TMEM268Q5VZI3 342 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 CCDC144NLQ6NUI1 221 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 OR4S2Q8NH73 311 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 TMEM56Q96MV1 263 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 MRPL20Q9BYC9 149 aaKnown RBP12.54□□□□□ -0.4
UPF1-206ENST00000598471 RAB18Q9NP72 206 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 TMEM56-RWDD3S4R434 201 aa12.54□□□□□ -0.4
UPF1-206ENST00000598471 ABCA2Q9BZC7 2435 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 A0A1W2PRD5 423 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 A0A1W2PRF3 423 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 A0A1W2PRM7 423 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 GOSR2O14653 212 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 SMAD7O15105 426 aaKnown RBP12.53□□□□□ -0.4
UPF1-206ENST00000598471 PFDN1O60925 122 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 FCGR3BO75015 233 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 CDS2O95674 445 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 CT45A6P0DMU7 189 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 CT45A5P0DMU8 189 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 CT45A7P0DMV0 189 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 MC5RP33032 325 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 LPAR6P43657 344 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 RAB13P51153 203 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 ARHGDIBP52566 201 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 OR2B11Q5JQS5 317 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 DHRS7BQ6IAN0 325 aaPredicted RBP12.53□□□□□ -0.4
UPF1-206ENST00000598471 SPNS3Q6ZMD2 512 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 C1orf229Q6ZS94 237 aaPredicted RBP12.53□□□□□ -0.4
UPF1-206ENST00000598471 AKAP14Q86UN6 197 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 OR8H3Q8N146 312 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 ZNF383Q8NA42 475 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 RNASE11Q8TAA1 199 aaKnown RBP12.53□□□□□ -0.4
UPF1-206ENST00000598471 RBPMSQ93062 196 aaKnown RBP12.53□□□□□ -0.4
UPF1-206ENST00000598471 NABP2Q9BQ15 211 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 SLC35D1Q9NTN3 355 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 PRR13Q9NZ81 148 aa12.53□□□□□ -0.4
UPF1-206ENST00000598471 TRAV40A0A0B4J280 105 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 IGHV1-69DA0A0B4J2H0 117 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 CENPVL3A0A0U1RRI6 287 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 DBX1A6NMT0 343 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 LY6LH3BQJ8 138 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 NPFFO15130 113 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 HPRT1P00492 218 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 IGHV1-69P01742 117 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 SELENOHQ8IZQ5 122 aaKnown RBP12.52□□□□□ -0.41
UPF1-206ENST00000598471 TEX29Q8N6K0 151 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 DDB2Q92466 427 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 COMMD9Q9P000 198 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 TMED3Q9Y3Q3 217 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 TEX15Q9BXT5 2789 aa12.52□□□□□ -0.41
UPF1-206ENST00000598471 CCDC168Q8NDH2 2452 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 IGHV1-3A0A0C4DH29 117 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 H7C2Y5 167 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 CCNKO75909 580 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 HOXB5P09067 269 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 HLA-GP17693 338 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 SAA4P35542 130 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 AKR1C2P52895 323 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 ERVK-16P61578 105 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 DIAPH2-AS1Q14236 149 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 ZNF585BQ52M93 769 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 GSG1LQ6UXU4 331 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 MOB3BQ86TA1 216 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 PDPNQ86YL7 162 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 SLC35G3Q8N808 338 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 OR5AN1Q8NGI8 311 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 OR5M8Q8NGP6 311 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 ASB13Q8WXK3 278 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 MALSU1Q96EH3 234 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 RRNAD1Q96FB5 475 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms