RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TRAV40A0A0B4J280 105 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 A0A0B4J2A0 478 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 LEUTXA8MZ59 168 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 CEACAM3P40198 252 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 LGALS4P56470 323 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 DIAPH2-AS1Q14236 149 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 TCTEX1D1Q8N7M0 179 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 DPM3Q9P2X0 92 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 SHPKQ9UHJ6 478 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 PRELID3BQ9Y3B1 194 aa11.89□□□□□ -0.51
VRK3-212ENST00000596814 MYO9AB2RTY4 2548 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 FLNAP21333 2647 aaKnown RBP11.88□□□□□ -0.51
VRK3-212ENST00000596814 CENPVL3A0A0U1RRI6 287 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 LY6LH3BQJ8 138 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 TXNL1O43396 289 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 SERPINE2P07093 398 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 CT45A6P0DMU7 189 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 CT45A5P0DMU8 189 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 CT45A7P0DMV0 189 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 KIR2DS2P43631 304 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 TPTE2P1Q5T6R2 138 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 MINOS1Q5TGZ0 78 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 SPAG16Q8N0X2 631 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 LGI3Q8N145 548 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 ZNF383Q8NA42 475 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 DDB2Q92466 427 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 TBL2Q9Y4P3 447 aaKnown RBP11.88□□□□□ -0.51
VRK3-212ENST00000596814 MINOS1-NBL1R4GNA1 71 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 ABCA1O95477 2261 aa11.88□□□□□ -0.51
VRK3-212ENST00000596814 FLNBO75369 2602 aaKnown RBP11.87□□□□□ -0.51
VRK3-212ENST00000596814 HMX3A6NHT5 357 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 RAMP3O60896 148 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 GAPDHP04406 335 aaKnown RBP11.87□□□□□ -0.51
VRK3-212ENST00000596814 ZNF816Q0VGE8 651 aaPredicted RBP11.87□□□□□ -0.51
VRK3-212ENST00000596814 FCN2Q15485 313 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 LDLRAD2Q5SZI1 272 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 GPR157Q5UAW9 335 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 LHFPL4Q7Z7J7 247 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 ZNF695Q8IW36 515 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 LRTM2Q8N967 370 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 LHFPL5Q8TAF8 219 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 CD300LFQ8TDQ1 290 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 TMEM56Q96MV1 263 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 NABP2Q9BQ15 211 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 FAM212BQ9NTI7 297 aaPredicted RBP11.87□□□□□ -0.51
VRK3-212ENST00000596814 MGAT4CQ9UBM8 478 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 TMEM56-RWDD3S4R434 201 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 AKAP9Q99996 3911 aa11.87□□□□□ -0.51
VRK3-212ENST00000596814 IGHV1-69DA0A0B4J2H0 117 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 DBX1A6NMT0 343 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 A8MV72 311 aaPredicted RBP11.86□□□□□ -0.51
VRK3-212ENST00000596814 NPFFO15130 113 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 FCGR3BO75015 233 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 CDS2O95674 445 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 IGHV1-69P01742 117 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 APOA2P02652 100 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 TRAPPC2P0DI81 140 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 TRAPPC2BP0DI82 140 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 EPHA1P21709 976 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 SAA4P35542 130 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 MIDNQ504T8 468 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 ZNF585BQ52M93 769 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 TMEM268Q5VZI3 342 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 PIGBOS1A0A0B4J2F0 54 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 IGHV1-3A0A0C4DH29 117 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 H0YJW9 148 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 GOSR2O14653 212 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 RBFOX2O43251 390 aaKnown RBP eCLIP11.86□□□□□ -0.51
VRK3-212ENST00000596814 AVPP01185 164 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 SULT1A3P0DMM9 295 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 SULT1A4P0DMN0 295 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 RPA2P15927 270 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 BRWD1-AS2P59051 145 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 TAGLNQ01995 201 aaKnown RBP11.86□□□□□ -0.51
VRK3-212ENST00000596814 RTL8BQ17RB0 113 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 SELENOHQ8IZQ5 122 aaKnown RBP11.86□□□□□ -0.51
VRK3-212ENST00000596814 OR11H7Q8NGC8 314 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 OR5AN1Q8NGI8 311 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 OR4S2Q8NH73 311 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 CHAC2Q8WUX2 184 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 RBPMSQ93062 196 aaKnown RBP11.86□□□□□ -0.51
VRK3-212ENST00000596814 IL22RA2Q969J5 263 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 SLC35D1Q9NTN3 355 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 HILPDAQ9Y5L2 63 aa11.86□□□□□ -0.51
VRK3-212ENST00000596814 ZANQ9Y493 2812 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 IGHV3OR16-10A0A075B7F0 116 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 A0A1W2PPI3 338 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 OOSP1A8MZH6 123 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 S1PR2O95136 353 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 HOXB5P09067 269 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 IGHV4-38-2P0DP08 117 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 LPAR6P43657 344 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 C2orf68Q2NKX9 166 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 RUSC1-AS1Q66K80 236 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 OR8H3Q8N146 312 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 SLC35G3Q8N808 338 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 C18orf12Q96KH6 178 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 RAB18Q9NP72 206 aa11.85□□□□□ -0.51
VRK3-212ENST00000596814 DUXBA0A1W2PPF3 345 aa11.84□□□□□ -0.51
VRK3-212ENST00000596814 CCSO14618 274 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms