RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ZNF221Q9UK13 617 aa10.13□□□□□ -0.79
LIG1-212ENST00000596549 A3GALT2U3KPV4 340 aa10.13□□□□□ -0.79
LIG1-212ENST00000596549 NOTOA8MTQ0 251 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 DIRAS3O95661 229 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 IGLV2-23P01705 113 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 APOA2P02652 100 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 OR8U9P0C7N5 309 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 RAB9AP51151 201 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 MRPS15P82914 257 aaKnown RBP10.12□□□□□ -0.79
LIG1-212ENST00000596549 C11orf87Q6NUJ2 197 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 ZNF773Q6PK81 442 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 Q6ZS49 121 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 LGALS14Q8TCE9 139 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 CLCC1Q96S66 551 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 RNF5Q99942 180 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 ATG5Q9H1Y0 275 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 Q9H521 79 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 SLC35D1Q9NTN3 355 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 FOXA2Q9Y261 457 aaPredicted RBP10.12□□□□□ -0.79
LIG1-212ENST00000596549 VSIG4Q9Y279 399 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 NUBP2Q9Y5Y2 271 aa10.12□□□□□ -0.79
LIG1-212ENST00000596549 DNAH9Q9NYC9 4486 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 ARPC1BO15143 372 aaKnown RBP10.11□□□□□ -0.79
LIG1-212ENST00000596549 SLC25A17O43808 307 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 ZNF616Q08AN1 781 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 ARFRP1Q13795 201 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 C9orf66Q5T8R8 295 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 SFXN4Q6P4A7 337 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 TMEM65Q6PI78 240 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 H1FOOQ8IZA3 346 aaPredicted RBP10.11□□□□□ -0.79
LIG1-212ENST00000596549 TCTEX1D1Q8N7M0 179 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 OR10J5Q8NHC4 309 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 ABHD5Q8WTS1 349 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 YTHDF1Q9BYJ9 559 aaKnown RBP10.11□□□□□ -0.79
LIG1-212ENST00000596549 DAPK2Q9UIK4 370 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 SCOCQ9UIL1 159 aa10.11□□□□□ -0.79
LIG1-212ENST00000596549 METTL21EPA6NDL7 271 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 SEC14L6B5MCN3 397 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 CRYGBP07316 175 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 CLEC2LP0C7M8 214 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 OR8U8P0C7N1 319 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 DTYMKP23919 212 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 RPS16P62249 146 aaKnown RBP10.1□□□□□ -0.79
LIG1-212ENST00000596549 DGCR2P98153 550 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 SRSF7Q16629 238 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIG1-212ENST00000596549 MRGPRG-AS1Q2M3A8 158 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 UNQ5815/PRO19632Q6UWF5 114 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 ZNF562Q6V9R5 426 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 PPP1R27Q86WC6 154 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 LFNGQ8NES3 379 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 NUDCD2Q8WVJ2 157 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 DDB2Q92466 427 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 ARPC1AQ92747 370 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 FLYWCH2Q96CP2 140 aaKnown RBP10.1□□□□□ -0.79
LIG1-212ENST00000596549 SLC25A38Q96DW6 304 aa10.1□□□□□ -0.79
LIG1-212ENST00000596549 TSNAXQ99598 290 aaKnown RBP10.1□□□□□ -0.79
LIG1-212ENST00000596549 RRP15Q9Y3B9 282 aaKnown RBP10.1□□□□□ -0.79
LIG1-212ENST00000596549 IGHV4OR15-8A0A075B7B6 117 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 A0A087WW49 117 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 TMEM235A6NFC5 223 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 LINC00473A8K010 186 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 SSX5O60225 188 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 LGALS1P09382 135 aaKnown RBP10.09□□□□□ -0.79
LIG1-212ENST00000596549 SDC2P34741 201 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 SLURP1P55000 103 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 MXD1Q05195 221 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 PJVKQ0ZLH3 352 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 ZNF260Q3ZCT1 412 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 AKIRIN2Q53H80 203 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 ACTBL2Q562R1 376 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 DEFB121Q5J5C9 76 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 HACD4Q5VWC8 232 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 TPRA1Q86W33 373 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 BVESQ8NE79 360 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 OR1N2Q8NGR9 330 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 GRPEL2Q8TAA5 225 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 HARBI1Q96MB7 349 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 PRR25Q96S07 402 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 GINS4Q9BRT9 223 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 SSR3Q9UNL2 185 aa10.09□□□□□ -0.79
LIG1-212ENST00000596549 SRRM4A7MD48 611 aaKnown RBP10.08□□□□□ -0.8
LIG1-212ENST00000596549 IGLV2-14P01704 120 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 IGHV3-11P01762 117 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 DUTP33316 252 aaKnown RBP10.08□□□□□ -0.8
LIG1-212ENST00000596549 TALDO1P37837 337 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 TPPP2P59282 170 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 NEDD8Q15843 81 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 CDNFQ49AH0 187 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 KCTD21Q4G0X4 260 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 TMEM177Q53S58 311 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 PYHIN1Q6K0P9 492 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 OR5H6Q8NGV6 325 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 DCUN1D4Q92564 292 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 B9D2Q9BPU9 175 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 CENPOQ9BU64 300 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 RHBDL2Q9NX52 303 aa10.08□□□□□ -0.8
LIG1-212ENST00000596549 IGKV1D-13A0A0B4J2D9 117 aa10.07□□□□□ -0.8
LIG1-212ENST00000596549 RAMP3O60896 148 aa10.07□□□□□ -0.8
LIG1-212ENST00000596549 IGKV1-13P0DP09 117 aa10.07□□□□□ -0.8
LIG1-212ENST00000596549 TGFBR1P36897 503 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms