RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 DYNC2LI1Q8TCX1 351 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 CMTM3Q96MX0 182 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 GPHA2Q96T91 129 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 MRPS7Q9Y2R9 242 aaKnown RBP8.76□□□□□ -1.01
VRK3-210ENST00000596121 MEGF8Q7Z7M0 2845 aa8.76□□□□□ -1.01
VRK3-210ENST00000596121 TCRBV4S1A1TA0A5B7 111 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 G3V318 75 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 CTDSP2O14595 271 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 HLA-DRB1P01911 266 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 IGF1P05019 195 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 CRYGBP07316 175 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 NAT1P18440 290 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 FCGR2CP31995 323 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 PRSS3P35030 304 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 LUMP51884 338 aaPredicted RBP8.75□□□□□ -1.01
VRK3-210ENST00000596121 TMBIM6P55061 237 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 BRWD1-AS2P59051 145 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 SSBP2P81877 361 aaPredicted RBP8.75□□□□□ -1.01
VRK3-210ENST00000596121 MRGPRG-AS1Q2M3A8 158 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 LIN54Q6MZP7 749 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 GPX8Q8TED1 209 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 CHPT1Q8WUD6 406 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 MMP27Q9H306 513 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 TPSG1Q9NRR2 321 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 SLC35D1Q9NTN3 355 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 RBM7Q9Y580 266 aaKnown RBP8.75□□□□□ -1.01
VRK3-210ENST00000596121 CEPT1Q9Y6K0 416 aa8.75□□□□□ -1.01
VRK3-210ENST00000596121 H3BMQ9 156 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 AP4M1O00189 453 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 ATP6V0E1O15342 81 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 RBBP9O75884 186 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 PMP2P02689 132 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 OR5H8P0DN80 308 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 CBX5P45973 191 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 RFX2P48378 723 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 THBS3P49746 956 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 ARPC4P59998 168 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 RPS16P62249 146 aaKnown RBP8.74□□□□□ -1.01
VRK3-210ENST00000596121 CX3CL1P78423 397 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 PJVKQ0ZLH3 352 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 C19orf54Q5BKX5 351 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 ZNF660Q6AZW8 331 aaPredicted RBP8.74□□□□□ -1.01
VRK3-210ENST00000596121 PDPNQ86YL7 162 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 SNX29P2Q8IUI4 249 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 FOXRED2Q8IWF2 684 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 ZNF645Q8N7E2 425 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 OR5AP2Q8NGF4 316 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 RAB2BQ8WUD1 216 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 FLYWCH2Q96CP2 140 aaKnown RBP8.74□□□□□ -1.01
VRK3-210ENST00000596121 CLCC1Q96S66 551 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 RNF5Q99942 180 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 OR51J1Q9H342 316 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 CCL28Q9NRJ3 127 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 METTL1Q9UBP6 276 aaKnown RBP8.74□□□□□ -1.01
VRK3-210ENST00000596121 RBMX2Q9Y388 322 aaKnown RBP8.74□□□□□ -1.01
VRK3-210ENST00000596121 WSB1Q9Y6I7 421 aa8.74□□□□□ -1.01
VRK3-210ENST00000596121 ARPC1BO15143 372 aaKnown RBP8.73□□□□□ -1.01
VRK3-210ENST00000596121 KCNAB3O43448 404 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 PPYP01298 95 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 APOA2P02652 100 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 RPLP1P05386 114 aaKnown RBP8.73□□□□□ -1.01
VRK3-210ENST00000596121 PPIFP30405 207 aaKnown RBP8.73□□□□□ -1.01
VRK3-210ENST00000596121 RPL23AP62750 156 aaKnown RBP8.73□□□□□ -1.01
VRK3-210ENST00000596121 KIAA0141Q14154 515 aaPredicted RBP8.73□□□□□ -1.01
VRK3-210ENST00000596121 CDK10Q15131 360 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 TMEM177Q53S58 311 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 MZT2AQ6P582 158 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 OVCH2Q7RTZ1 564 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 OR4X2Q8NGF9 303 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 GIMAP1Q8WWP7 306 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 ISOC1Q96CN7 298 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 R3HDM4Q96D70 268 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 ABHD1Q96SE0 405 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 NECAP2Q9NVZ3 263 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 KIAA1456Q9P272 454 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 EXTL2Q9UBQ6 330 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 ZNF580Q9UK33 172 aa8.73□□□□□ -1.01
VRK3-210ENST00000596121 TSSC4Q9Y5U2 329 aaPredicted RBP8.73□□□□□ -1.01
VRK3-210ENST00000596121 TNCP24821 2201 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 FAM25AB3EWG3 89 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 FAM25CB3EWG5 89 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 FAM25GB3EWG6 89 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 SLC25A17O43808 307 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 SOX15O60248 233 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 CA2P00918 260 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 IGHG4P01861 327 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 OPN1MWP04001 364 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 OPN1MW2P0DN77 364 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 OPN1MW3P0DN78 364 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 HLA-DMAP28067 261 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 DYRK1AQ13627 763 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 RNASE12Q5GAN4 147 aaKnown RBP8.72□□□□□ -1.01
VRK3-210ENST00000596121 DHRS11Q6UWP2 260 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 ETV3LQ6ZN32 361 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 LAX1Q8IWV1 398 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 RNF152Q8N8N0 203 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 MINDY2Q8NBR6 621 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 SECTM1Q8WVN6 248 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 AP3S1Q92572 193 aa8.72□□□□□ -1.01
VRK3-210ENST00000596121 BCL7BQ9BQE9 202 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms