RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 DAPK2Q9UIK4 370 aa8.22□□□□□ -1.09
LIG3-212ENST00000590181 VSIG4Q9Y279 399 aa8.22□□□□□ -1.09
LIG3-212ENST00000590181 RRP15Q9Y3B9 282 aaKnown RBP8.22□□□□□ -1.09
LIG3-212ENST00000590181 RBM7Q9Y580 266 aaKnown RBP8.22□□□□□ -1.09
LIG3-212ENST00000590181 NUBP2Q9Y5Y2 271 aa8.22□□□□□ -1.09
LIG3-212ENST00000590181 IGKV1-6A0A0C4DH72 117 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 SHISA3A0PJX4 238 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 LINC01548A6NM66 108 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 BET1O15155 118 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 OR8U8P0C7N1 319 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 GSTT2P0CG29 244 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 GSTT2BP0CG30 244 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 SLC2A2P11168 524 aaPredicted RBP8.21□□□□□ -1.1
LIG3-212ENST00000590181 SDC2P34741 201 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 RAB9AP51151 201 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 GNG2P59768 71 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 ARPC4P59998 168 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 RPS16P62249 146 aaKnown RBP8.21□□□□□ -1.1
LIG3-212ENST00000590181 CX3CL1P78423 397 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 CD69Q07108 199 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 TMEM177Q53S58 311 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 RPL39P5Q59GN2 51 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 FAM209BQ5JX69 171 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 C10orf99Q6UWK7 81 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 PPP1R27Q86WC6 154 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 H1FOOQ8IZA3 346 aaPredicted RBP8.21□□□□□ -1.1
LIG3-212ENST00000590181 ZNF491Q8N8L2 437 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 TEX45Q8NA69 505 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 KCTD12Q96CX2 325 aaKnown RBP8.21□□□□□ -1.1
LIG3-212ENST00000590181 CMTM3Q96MX0 182 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 HSPB9Q9BQS6 159 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 RHBDL2Q9NX52 303 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 OR1A1Q9P1Q5 309 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 SPATA2Q9UM82 520 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 FOXA2Q9Y261 457 aaPredicted RBP8.21□□□□□ -1.1
LIG3-212ENST00000590181 PRELID3BQ9Y3B1 194 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 OR2W1Q9Y3N9 320 aa8.21□□□□□ -1.1
LIG3-212ENST00000590181 SORL1Q92673 2214 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 A0A0G2JLM5 398 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 M0R1X1 148 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 ATP6V0E1O15342 81 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 PROP1O75360 226 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 HLA-DQB1P01920 261 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 RPLP1P05386 114 aaKnown RBP8.2□□□□□ -1.1
LIG3-212ENST00000590181 OR8U9P0C7N5 309 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 FHL3Q13643 280 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 PSG5Q15238 335 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 ZNF260Q3ZCT1 412 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 IGSF11Q5DX21 431 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 C9orf66Q5T8R8 295 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 NR2C2APQ86WQ0 139 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 ZNF645Q8N7E2 425 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 ZBTB34Q8NCN2 500 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 TSPAN14Q8NG11 270 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 S100A16Q96FQ6 103 aaKnown RBP8.2□□□□□ -1.1
LIG3-212ENST00000590181 HSD17B10Q99714 261 aaKnown RBP8.2□□□□□ -1.1
LIG3-212ENST00000590181 OR2D2Q9H210 308 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 PARP11Q9NR21 331 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 SLC35D1Q9NTN3 355 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 SDHAF2Q9NX18 166 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 METTL1Q9UBP6 276 aaKnown RBP8.2□□□□□ -1.1
LIG3-212ENST00000590181 ANXA10Q9UJ72 324 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 LINC00527Q9UJ94 153 aa8.2□□□□□ -1.1
LIG3-212ENST00000590181 MRPS7Q9Y2R9 242 aaKnown RBP8.2□□□□□ -1.1
LIG3-212ENST00000590181 EPPK1P58107 5090 aaKnown RBP8.2□□□□□ -1.1
LIG3-212ENST00000590181 A0A075B6Q4 140 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 LOC100506127A0A0U1RQW1 187 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 I3L521 148 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 VMA21Q3ZAQ7 101 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 ACTBL2Q562R1 376 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 C19orf54Q5BKX5 351 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 ETV3LQ6ZN32 361 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 LCNL1Q6ZST4 164 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 C8orf86Q6ZUL3 223 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 ZNF383Q8NA42 475 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 VSTM2AQ8TAG5 236 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 RAX2Q96IS3 184 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 RITA1Q96K30 269 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 ST6GALNAC5Q9BVH7 336 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 OR51E2Q9H255 320 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 BIRC6Q9NR09 4857 aa8.19□□□□□ -1.1
LIG3-212ENST00000590181 TNCP24821 2201 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 WI2-2373I1.2A0A1W2PRP0 233 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 SHOXO15266 292 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 XRCC3O43542 346 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 AIREO43918 545 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 CNIH1O95406 144 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 IGKV1-16P04430 117 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 FGF2P09038 288 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 AADACP22760 399 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 DUTP33316 252 aaKnown RBP8.18□□□□□ -1.1
LIG3-212ENST00000590181 KIR2DS2P43631 304 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 UBE2KP61086 200 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 DGCR2P98153 550 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 ZNF616Q08AN1 781 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 FXYD3Q14802 87 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 NEDD8Q15843 81 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 DEFB121Q5J5C9 76 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 IDNKQ5T6J7 187 aa8.18□□□□□ -1.1
LIG3-212ENST00000590181 ZNF66Q6ZN08 573 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms