RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 ZNF221Q9UK13 617 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 DNAH1Q9P2D7 4330 aa9.07□□□□□ -0.96
LIG3-209ENST00000586435 SOCS1O15524 211 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 IGLV2-23P01705 113 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 SCTP09683 121 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 SNRPBP14678 240 aaKnown RBP9.06□□□□□ -0.96
LIG3-209ENST00000586435 AADACP22760 399 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 ZFAND6Q6FIF0 208 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 IL34Q6ZMJ4 242 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 BPIFB6Q8NFQ5 453 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 TMED9Q9BVK6 235 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 ZNF355PQ9NSJ1 428 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 SIGLEC8Q9NYZ4 499 aa9.06□□□□□ -0.96
LIG3-209ENST00000586435 LSM2Q9Y333 95 aaKnown RBP9.06□□□□□ -0.96
LIG3-209ENST00000586435 IGKV1-6A0A0C4DH72 117 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 SLC17A2O00624 439 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 DIRAS3O95661 229 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 CDK1P06493 297 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 CRYGBP07316 175 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 ARSBP15848 533 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 LGALS7P47929 136 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 SERPINB10P48595 397 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 TMEM50BP56557 158 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 SPHARQ15513 63 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 HAGHQ16775 308 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 ZNF343Q6P1L6 599 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 CEACAM19Q7Z692 300 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 OR5T1Q8NG75 326 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 TINAGL1Q9GZM7 467 aaPredicted RBP9.05□□□□□ -0.96
LIG3-209ENST00000586435 SLC35D1Q9NTN3 355 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 GAR1Q9NY12 217 aaKnown RBP9.05□□□□□ -0.96
LIG3-209ENST00000586435 RDH8Q9NYR8 311 aa9.05□□□□□ -0.96
LIG3-209ENST00000586435 ANKRD34BA5PLL1 514 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 TRDCB7Z8K6 153 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 M0R1X1 148 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 EBAG9O00559 213 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 CNIH1O95406 144 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 LINC00205P59089 165 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 TAGLNQ01995 201 aaKnown RBP9.04□□□□□ -0.96
LIG3-209ENST00000586435 TMEM177Q53S58 311 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 LCN12Q6JVE5 192 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 GTSCR1Q86UQ5 136 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 Q8N402 240 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 OR4A4PQ8NGN8 299 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 ARHGAP5-AS1Q96IT6 56 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 USMG5Q96IX5 58 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 HARBI1Q96MB7 349 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 GFI1Q99684 422 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 CMSS1Q9BQ75 279 aaKnown RBP9.04□□□□□ -0.96
LIG3-209ENST00000586435 CABLES2Q9BTV7 478 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 PECRQ9BY49 303 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 PLGRKTQ9HBL7 147 aa9.04□□□□□ -0.96
LIG3-209ENST00000586435 PEF1Q9UBV8 284 aaKnown RBP9.04□□□□□ -0.96
LIG3-209ENST00000586435 CASQ2O14958 399 aaPredicted RBP9.03□□□□□ -0.96
LIG3-209ENST00000586435 OR2A4O95047 310 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 IFNA6P05013 189 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 CSN3P07498 182 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 RANBP1P43487 201 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 SYNJ2BPP57105 145 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 PJVKQ0ZLH3 352 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 DYRK1AQ13627 763 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 P2RY14Q15391 338 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 TATDN3Q17R31 274 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 OGFRL1Q5TC84 451 aaPredicted RBP9.03□□□□□ -0.96
LIG3-209ENST00000586435 OR56B1Q8NGI3 324 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 OR2K2Q8NGT1 345 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 OR2D2Q9H210 308 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 SDHAF2Q9NX18 166 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 BIRC6Q9NR09 4857 aa9.03□□□□□ -0.96
LIG3-209ENST00000586435 EPPK1P58107 5090 aaKnown RBP9.02□□□□□ -0.96
LIG3-209ENST00000586435 FABP7O15540 132 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 ARL6IP5O75915 188 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 TRBV12-3P01733 135 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 RRASP10301 218 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 MECP2P51608 486 aaKnown RBP9.02□□□□□ -0.97
LIG3-209ENST00000586435 CBX3Q13185 183 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 IRF3Q14653 427 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 RCN1Q15293 331 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 MED22Q15528 200 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 TRAM1Q15629 374 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 RAB11BQ15907 218 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 MRGPRG-AS1Q2M3A8 158 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 RPEL1Q2QD12 228 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 PLAC9Q5JTB6 97 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 LIPKQ5VXJ0 399 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 ADAMTSL5Q6ZMM2 481 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 TMEM91Q6ZNR0 172 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 LAX1Q8IWV1 398 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 ADAD2Q8NCV1 583 aaKnown RBP9.02□□□□□ -0.97
LIG3-209ENST00000586435 BVESQ8NE79 360 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 UFD1Q92890 307 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 PEMTQ9UBM1 199 aa9.02□□□□□ -0.97
LIG3-209ENST00000586435 TRBV6-7A0A0A0MS04 114 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 SHISA3A0PJX4 238 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 ERICH4A6NGS2 130 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 SRRM4A7MD48 611 aaKnown RBP9.01□□□□□ -0.97
LIG3-209ENST00000586435 SHOXO15266 292 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 AIREO43918 545 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 OR9G9P0C7N8 305 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 PSMA1P25786 263 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms