RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CRYGBP07316 175 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 LIMS3P0CW19 117 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 LIMS4P0CW20 117 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 GABRB1P18505 474 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 BMI1P35226 326 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 CEACAM6P40199 344 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 RHOGP84095 191 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 ATP5G2Q06055 141 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 EXOSC2Q13868 293 aaKnown RBP9.52□□□□□ -0.89
SS18-219ENST00000581570 CDH26Q8IXH8 852 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 SVOPQ8N4V2 548 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 ADAD2Q8NCV1 583 aaKnown RBP9.52□□□□□ -0.89
SS18-219ENST00000581570 OR52B4Q8NGK2 314 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 SETD6Q8TBK2 473 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 PHLDA1Q8WV24 401 aaPredicted RBP9.52□□□□□ -0.89
SS18-219ENST00000581570 EDARADDQ8WWZ3 215 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 THRSPQ92748 146 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 FAM46BQ96A09 425 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 SLC7A6OSQ96CW6 309 aaPredicted RBP9.52□□□□□ -0.89
SS18-219ENST00000581570 Q96MT0 163 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 FAAP24Q9BTP7 215 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 CHMP1AQ9HD42 196 aaPredicted RBP9.52□□□□□ -0.89
SS18-219ENST00000581570 AKIP1Q9NQ31 210 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 ZNF230Q9UIE0 474 aaPredicted RBP9.52□□□□□ -0.89
SS18-219ENST00000581570 TP53TG1Q9Y2A0 90 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 SELENOKQ9Y6D0 94 aa9.52□□□□□ -0.89
SS18-219ENST00000581570 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.51□□□□□ -0.89
SS18-219ENST00000581570 MSGN1A6NI15 193 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 FAM223BA6NKX1 122 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 OGG1O15527 345 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 TUSC2O75896 110 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 ALPLP05186 524 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 OR9G9P0C7N8 305 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 ATF4P18848 351 aaPredicted RBP9.51□□□□□ -0.89
SS18-219ENST00000581570 Q499Y3 187 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 ZNF880Q6PDB4 577 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 FAM223AQ8IWN6 122 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 SMIM19Q96E16 107 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 SLC35D1Q9NTN3 355 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 MRPS18AQ9NVS2 196 aaKnown RBP9.51□□□□□ -0.89
SS18-219ENST00000581570 OR1A1Q9P1Q5 309 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 ZNF221Q9UK13 617 aa9.51□□□□□ -0.89
SS18-219ENST00000581570 A0A1W2PPK0 400 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 ATP8B1O43520 1251 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 PRH1P02810 166 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 CBLN1P23435 193 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 ZBTB25P24278 435 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 ANKRD55Q3KP44 614 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 OR2G6Q5TZ20 316 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 ZNF57Q68EA5 555 aaPredicted RBP9.5□□□□□ -0.89
SS18-219ENST00000581570 TMPRSS11AQ6ZMR5 421 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 Q6ZWC4 215 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 C6orf201Q7Z4U5 140 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 TMEM61Q8N0U2 210 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 TMEM217Q8N7C4 229 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 RHOXF1Q8NHV9 184 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 KCNG3Q8TAE7 436 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 BABAM2Q9NXR7 383 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 RPL36Q9Y3U8 105 aaKnown RBP9.5□□□□□ -0.89
SS18-219ENST00000581570 VPS13DQ5THJ4 4388 aa9.5□□□□□ -0.89
SS18-219ENST00000581570 TRBV5-7A0A0A0MS05 114 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 PPP5D1E7EU14 171 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 M0R1X1 148 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 LGALS9O00182 355 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 MPPED1O15442 326 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 OR2C1O95371 312 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 NAPSAO96009 420 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 HLA-AP01891 365 aaKnown RBP9.49□□□□□ -0.89
SS18-219ENST00000581570 ETV1P50549 477 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 APOC4P55056 127 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 RPS11P62280 158 aaKnown RBP eCLIP9.49□□□□□ -0.89
SS18-219ENST00000581570 TM4SF20Q53R12 229 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 YIF1BQ5BJH7 314 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 MOB1BQ7L9L4 216 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 LINC00528Q8N1L1 170 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 CACNG8Q8WXS5 425 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 PTX4Q96A99 478 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 HARBI1Q96MB7 349 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 GHRLQ9UBU3 117 aa9.49□□□□□ -0.89
SS18-219ENST00000581570 TRBV9A0A0B4J1U6 114 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 EI24O14681 340 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 SHOXO15266 292 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 GGCTO75223 188 aaKnown RBP9.48□□□□□ -0.89
SS18-219ENST00000581570 SCAF4O95104 1147 aaKnown RBP9.48□□□□□ -0.89
SS18-219ENST00000581570 ZNF45Q02386 682 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 TNXAQ16473 311 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 MRGPRG-AS1Q2M3A8 158 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 DEFB135Q30KP9 77 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 FAM209BQ5JX69 171 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 UQCC2Q9BRT2 126 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 FGF20Q9NP95 211 aaPredicted RBP9.48□□□□□ -0.89
SS18-219ENST00000581570 EXOSC1Q9Y3B2 195 aaKnown RBP9.48□□□□□ -0.89
SS18-219ENST00000581570 DMRT1Q9Y5R6 373 aa9.48□□□□□ -0.89
SS18-219ENST00000581570 SRRM4A7MD48 611 aaKnown RBP9.47□□□□□ -0.89
SS18-219ENST00000581570 UBE2CO00762 179 aa9.47□□□□□ -0.89
SS18-219ENST00000581570 DYNC1I1O14576 645 aa9.47□□□□□ -0.89
SS18-219ENST00000581570 LALBAP00709 142 aa9.47□□□□□ -0.89
SS18-219ENST00000581570 HTR2CP28335 458 aa9.47□□□□□ -0.89
SS18-219ENST00000581570 HLA-DRB3P79483 266 aa9.47□□□□□ -0.89
SS18-219ENST00000581570 C1orf146Q5VVC0 180 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms