RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ST6GALNAC5Q9BVH7 336 aa11.62□□□□□ -0.55
SS18-212ENST00000579061 PARP11Q9NR21 331 aa11.62□□□□□ -0.55
SS18-212ENST00000579061 SLC35D1Q9NTN3 355 aa11.62□□□□□ -0.55
SS18-212ENST00000579061 RBM7Q9Y580 266 aaKnown RBP11.62□□□□□ -0.55
SS18-212ENST00000579061 TRAV41A0A0B4J266 112 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 IGLV1-40P01703 118 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 IGKV1-16P04430 117 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 IGLL1P15814 213 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 RPS16P62249 146 aaKnown RBP11.61□□□□□ -0.55
SS18-212ENST00000579061 PLGLAQ15195 96 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 TCTEX1D1Q8N7M0 179 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 MYOZ3Q8TDC0 251 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 FLYWCH2Q96CP2 140 aaKnown RBP11.61□□□□□ -0.55
SS18-212ENST00000579061 ADTRPQ96IZ2 230 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 P2RX4Q99571 388 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 GPR61Q9BZJ8 451 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 DIABLOQ9NR28 239 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 NECAP2Q9NVZ3 263 aa11.61□□□□□ -0.55
SS18-212ENST00000579061 TGP01266 2768 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 TRAV18A0A075B6X5 111 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 G3V318 75 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 SSX5O60225 188 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 SLC22A5O76082 557 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 RRASP10301 218 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 LGALS7P47929 136 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 LINC00205P59089 165 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 CX3CL1P78423 397 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 TMEM267Q0VDI3 215 aaPredicted RBP11.6□□□□□ -0.55
SS18-212ENST00000579061 CBX3Q13185 183 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 PSG5Q15238 335 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 C19orf54Q5BKX5 351 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 ZNF562Q6V9R5 426 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 MINDY2Q8NBR6 621 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 C5orf30Q96GV9 206 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 MCRIP2Q9BUT9 160 aaKnown RBP11.6□□□□□ -0.55
SS18-212ENST00000579061 METTL1Q9UBP6 276 aaKnown RBP11.6□□□□□ -0.55
SS18-212ENST00000579061 ANXA10Q9UJ72 324 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 OR2W1Q9Y3N9 320 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 NUBP2Q9Y5Y2 271 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 WSB1Q9Y6I7 421 aa11.6□□□□□ -0.55
SS18-212ENST00000579061 CCL24O00175 119 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 FCN1O00602 326 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 HLA-DQB1P01920 261 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 RPS19P39019 145 aaKnown RBP11.59□□□□□ -0.55
SS18-212ENST00000579061 NDPQ00604 133 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 TMEM177Q53S58 311 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 FOXB2Q5VYV0 432 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 TMEM65Q6PI78 240 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 LCNL1Q6ZST4 164 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 C4orf3Q8WVX3 66 aa11.59□□□□□ -0.55
SS18-212ENST00000579061 EGR2P11161 476 aaPredicted RBP11.58□□□□□ -0.56
SS18-212ENST00000579061 DUTP33316 252 aaKnown RBP11.58□□□□□ -0.56
SS18-212ENST00000579061 TGFBR1P36897 503 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 LUMP51884 338 aaPredicted RBP11.58□□□□□ -0.56
SS18-212ENST00000579061 RUNX1Q01196 453 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 KIAA0141Q14154 515 aaPredicted RBP11.58□□□□□ -0.56
SS18-212ENST00000579061 RTL8BQ17RB0 113 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 AKIRIN2Q53H80 203 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 ZNF645Q8N7E2 425 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 ZNF491Q8N8L2 437 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 DDB2Q92466 427 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 RAX2Q96IS3 184 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 UBE2E2Q96LR5 201 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 AUNIPQ9H7T9 357 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 FOXA2Q9Y261 457 aaPredicted RBP11.58□□□□□ -0.56
SS18-212ENST00000579061 FBXO7Q9Y3I1 522 aa11.58□□□□□ -0.56
SS18-212ENST00000579061 XRCC3O43542 346 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 SLC25A17O43808 307 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 TUSC2O75896 110 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 CA2P00918 260 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 IGLV2-23P01705 113 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 NFYAP23511 347 aaPredicted RBP11.57□□□□□ -0.56
SS18-212ENST00000579061 CBX5P45973 191 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 RAB9AP51151 201 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 ECSCRQ19T08 205 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 UBE2NLQ5JXB2 153 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 PYHIN1Q6K0P9 492 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 PPP1R27Q86WC6 154 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 HOGA1Q86XE5 327 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 BVESQ8NE79 360 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 BEST4Q8NFU0 473 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 OR5M8Q8NGP6 311 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 KCTD12Q96CX2 325 aaKnown RBP11.57□□□□□ -0.56
SS18-212ENST00000579061 S100A16Q96FQ6 103 aaKnown RBP11.57□□□□□ -0.56
SS18-212ENST00000579061 HARBI1Q96MB7 349 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 FUNDC2Q9BWH2 189 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 KLK15Q9H2R5 256 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 VSIG4Q9Y279 399 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 TNCP24821 2201 aa11.57□□□□□ -0.56
SS18-212ENST00000579061 A0A1W2PN81 502 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 SHOXO15266 292 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 CRYGBP07316 175 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 CHRNA7P36544 502 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 LSM3P62310 102 aaKnown RBP11.56□□□□□ -0.56
SS18-212ENST00000579061 EGFEM1PQ0D2K5 195 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 FHL3Q13643 280 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 UNQ5815/PRO19632Q6UWF5 114 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 OR13F1Q8NGS4 319 aa11.56□□□□□ -0.56
SS18-212ENST00000579061 OSR1Q8TAX0 266 aaPredicted RBP11.56□□□□□ -0.56
SS18-212ENST00000579061 ABHD5Q8WTS1 349 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms