RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 CEACAM3P40198 252 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 TMEM187Q14656 261 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 GPR157Q5UAW9 335 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 TGIF2LXQ8IUE1 241 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 OR5AN1Q8NGI8 311 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 OR52B4Q8NGK2 314 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 OR51H1Q8NH63 302 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 GLYATL2Q8WU03 294 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 RPEQ96AT9 228 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 C18orf12Q96KH6 178 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 TP53RKQ96S44 253 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 MRPL20Q9BYC9 149 aaKnown RBP13.06□□□□□ -0.32
SS18-211ENST00000578954 TMEM222Q9H0R3 208 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 SHPKQ9UHJ6 478 aa13.06□□□□□ -0.32
SS18-211ENST00000578954 A0A1W2PPI3 338 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 RBFOX2O43251 390 aaKnown RBP eCLIP13.05□□□□□ -0.32
SS18-211ENST00000578954 CREBL2O60519 120 aaPredicted RBP13.05□□□□□ -0.32
SS18-211ENST00000578954 IFNA2P01563 188 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 GAPDHP04406 335 aaKnown RBP13.05□□□□□ -0.32
SS18-211ENST00000578954 IGHV4-38-2P0DP08 117 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 ANXA3P12429 323 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 KIR2DS2P43631 304 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 BRWD1-AS2P59051 145 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 BPIFB3P59826 476 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 TAGLNQ01995 201 aaKnown RBP13.05□□□□□ -0.32
SS18-211ENST00000578954 HABP2Q14520 560 aaPredicted RBP13.05□□□□□ -0.32
SS18-211ENST00000578954 LHFPL4Q7Z7J7 247 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 PDZD9Q8IXQ8 264 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 OR8H3Q8N146 312 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 LRTM2Q8N967 370 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 ZNF383Q8NA42 475 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 MALSU1Q96EH3 234 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 OR51J1Q9H342 316 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 OTOGQ6ZRI0 2925 aa13.05□□□□□ -0.32
SS18-211ENST00000578954 A0A1B0GVG6 124 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 H0YJW9 148 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 SAA4P35542 130 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 LGALS4P56470 323 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 LINC00205P59089 165 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 SRPXP78539 464 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 SLC9A3R2Q15599 337 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 ZNF585BQ52M93 769 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 LIAT1Q6ZQX7 453 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 DRAXINQ8NBI3 349 aaPredicted RBP13.04□□□□□ -0.32
SS18-211ENST00000578954 CD300LFQ8TDQ1 290 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 TCTEX1D2Q8WW35 142 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 IL22RA2Q969J5 263 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 TMEM56Q96MV1 263 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 PRELID3BQ9Y3B1 194 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 TMEM56-RWDD3S4R434 201 aa13.04□□□□□ -0.32
SS18-211ENST00000578954 ACANP16112 2415 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 IGHV1-3A0A0C4DH29 117 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 A0A1W2PRD5 423 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 A0A1W2PRF3 423 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 A0A1W2PRM7 423 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 DBX1A6NMT0 343 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 CDS2O95674 445 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 RPA2P15927 270 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 EPHA1P21709 976 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 REG1BP48304 166 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 ANKRD55Q3KP44 614 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 SP6Q3SY56 376 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 CCDC144NLQ6NUI1 221 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 SPAG16Q8N0X2 631 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 C12orf45Q8N5I9 185 aaPredicted RBP13.03□□□□□ -0.32
SS18-211ENST00000578954 TEX29Q8N6K0 151 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 TMUB1Q9BVT8 246 aa13.03□□□□□ -0.32
SS18-211ENST00000578954 RRASP10301 218 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 FOSL1P15407 271 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 CBX3Q13185 183 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 RUSC1-AS1Q66K80 236 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 DHRS7BQ6IAN0 325 aaPredicted RBP13.02□□□□□ -0.33
SS18-211ENST00000578954 C9orf139Q6ZV77 190 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 PDPNQ86YL7 162 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 CADM3Q8N126 398 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 LGI3Q8N145 548 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 DYNAPQ8N1N2 210 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 COQ8AQ8NI60 647 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 LHFPL5Q8TAF8 219 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 CASTOR1Q8WTX7 329 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 C17orf50Q8WW18 174 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 CFHR4Q92496 578 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 PHB2Q99623 299 aa13.02□□□□□ -0.33
SS18-211ENST00000578954 PIGBOS1A0A0B4J2F0 54 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 DUXBA0A1W2PPF3 345 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 RAMP3O60896 148 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 FCGR3BO75015 233 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 IGKV1-39P01597 117 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 APOA2P02652 100 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 IGKV1D-39P04432 117 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 MC5RP33032 325 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 OR4S2Q8NH73 311 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 NANPQ8TBE9 248 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 CHAC2Q8WUX2 184 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 MEGF9Q9H1U4 602 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 PLEKHA2Q9HB19 425 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 SLC35D1Q9NTN3 355 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 TMEM160Q9NX00 188 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 PRR13Q9NZ81 148 aa13.01□□□□□ -0.33
SS18-211ENST00000578954 NUP50Q9UKX7 468 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms