RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 NOL3O60936 208 aaKnown RBP15.36■□□□□ 0.05
SS18-209ENST00000578595 PROP1O75360 226 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 ALDH3B2P48448 385 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 THBS3P49746 956 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 CTF1Q16619 201 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 RTL8BQ17RB0 113 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 HOGA1Q86XE5 327 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 NPBQ8NG41 125 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 ACOT12Q8WYK0 555 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 AP3S1Q92572 193 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 FLYWCH2Q96CP2 140 aaKnown RBP15.36■□□□□ 0.05
SS18-209ENST00000578595 OR2W1Q9Y3N9 320 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 A3GALT2U3KPV4 340 aa15.36■□□□□ 0.05
SS18-209ENST00000578595 ADARB2-AS1A8MUL3 147 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 ATP6V0E1O15342 81 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 HPGDSO60760 199 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 TUSC2O75896 110 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 NDUFA3O95167 84 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 HLA-DRB1P01911 266 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 IGKV1-16P04430 117 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 ECSCRQ19T08 205 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 CXorf66Q5JRM2 361 aaPredicted RBP15.35■□□□□ 0.05
SS18-209ENST00000578595 ZNF645Q8N7E2 425 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 BVESQ8NE79 360 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 HARBI1Q96MB7 349 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 OR51J1Q9H342 316 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 NECAP2Q9NVZ3 263 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 WSB1Q9Y6I7 421 aa15.35■□□□□ 0.05
SS18-209ENST00000578595 SHOXO15266 292 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 SLC25A17O43808 307 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 APOA1P02647 267 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 OR5H8P0DN80 308 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 TEX38Q6PEX7 206 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 SNX29P2Q8IUI4 249 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 COMMD1Q8N668 190 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 KLHL30-AS1Q8NEE0 82 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 C5orf30Q96GV9 206 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 ADTRPQ96IZ2 230 aa15.34■□□□□ 0.05
SS18-209ENST00000578595 IGHV7-81A0A0B4J1V7 117 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 ZNF182P17025 639 aaPredicted RBP15.33■□□□□ 0.04
SS18-209ENST00000578595 FCGR2CP31995 323 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 PRSS3P35030 304 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 FXYD4P59646 89 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 RPL23AP62750 156 aaKnown RBP15.33■□□□□ 0.04
SS18-209ENST00000578595 PSG5Q15238 335 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 OR2B11Q5JQS5 317 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 LCNL1Q6ZST4 164 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 KCTD9Q7L273 389 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 C1QL4Q86Z23 238 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 SECTM1Q8WVN6 248 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 RNF5Q99942 180 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 DCUN1D5Q9BTE7 237 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 GAB2Q9UQC2 676 aa15.33■□□□□ 0.04
SS18-209ENST00000578595 IGKV1D-13A0A0B4J2D9 117 aa15.32■□□□□ 0.04
SS18-209ENST00000578595 IGKV1-13P0DP09 117 aa15.32■□□□□ 0.04
SS18-209ENST00000578595 ELK1P19419 428 aa15.32■□□□□ 0.04
SS18-209ENST00000578595 CD33P20138 364 aa15.32■□□□□ 0.04
SS18-209ENST00000578595 AADACP22760 399 aa15.32■□□□□ 0.04
SS18-209ENST00000578595 GNB1P62873 340 aa15.32■□□□□ 0.04
SS18-209ENST00000578595 RNASE12Q5GAN4 147 aaKnown RBP15.32■□□□□ 0.04
SS18-209ENST00000578595 EHFQ9NZC4 300 aa15.32■□□□□ 0.04
SS18-209ENST00000578595 TRAV41A0A0B4J266 112 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 LINC00473A8K010 186 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 G3V318 75 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 RGS5O15539 181 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 SLC22A5O76082 557 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 SPDEFO95238 335 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 CRYZL1O95825 349 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 CA2P00918 260 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 HLA-DQB1P01920 261 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 RPLP1P05386 114 aaKnown RBP15.31■□□□□ 0.04
SS18-209ENST00000578595 RRASP10301 218 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 DUTP33316 252 aaKnown RBP15.31■□□□□ 0.04
SS18-209ENST00000578595 HERV-K104P61576 105 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 TAGLNQ01995 201 aaKnown RBP15.31■□□□□ 0.04
SS18-209ENST00000578595 CDK10Q15131 360 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 TMEM17Q86X19 198 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 OR5AP2Q8NGF4 316 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 OR5H2Q8NGV7 314 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 RAB2BQ8WUD1 216 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 TCTEX1D2Q8WW35 142 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 SNAPC3Q92966 411 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 TPSG1Q9NRR2 321 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 TAS2R8Q9NYW2 309 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 RBMX2Q9Y388 322 aaKnown RBP15.31■□□□□ 0.04
SS18-209ENST00000578595 PRELID3BQ9Y3B1 194 aa15.31■□□□□ 0.04
SS18-209ENST00000578595 FCGR3BO75015 233 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 CNIH1O95406 144 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 PPYP01298 95 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 IGF1P05019 195 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 TNCP24821 2201 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 RPL5P46777 297 aaKnown RBP15.3■□□□□ 0.04
SS18-209ENST00000578595 CX3CL1P78423 397 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 NDPQ00604 133 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 FOXE3Q13461 319 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 SPCS2Q15005 226 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 TMEM65Q6PI78 240 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 C18orf65Q6ZTR6 163 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 C8orf86Q6ZUL3 223 aa15.3■□□□□ 0.04
SS18-209ENST00000578595 GRPEL2Q8TAA5 225 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms