RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 UNQ9165/PRO28630Q6UXU0 137 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 GAPTQ8N292 157 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 CPNE2Q96FN4 548 aaPredicted RBP11.52□□□□□ -0.57
VPS53-218ENST00000575207 NSMCE2Q96MF7 247 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 REEP1Q9H902 201 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 KCNIP1Q9NZI2 227 aa11.52□□□□□ -0.57
VPS53-218ENST00000575207 CRYGBP07316 175 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 PSME3P61289 254 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 TMEM236Q5W0B7 351 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 GLT8D1Q68CQ7 371 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 CLEC19AQ6UXS0 136 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 HACD2Q6Y1H2 254 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 OR51A4Q8NGJ6 313 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 GPER1Q99527 375 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 EFCAB1Q9HAE3 211 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 PGPEP1Q9NXJ5 209 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 TVP23BQ9NYZ1 205 aa11.51□□□□□ -0.57
VPS53-218ENST00000575207 EDF1O60869 148 aaKnown RBP11.5□□□□□ -0.57
VPS53-218ENST00000575207 IGHV3-23P01764 117 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 MYOD1P15172 320 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 CMC4P56277 68 aaPredicted RBP11.5□□□□□ -0.57
VPS53-218ENST00000575207 LIPKQ5VXJ0 399 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 MORN3Q6PF18 240 aaPredicted RBP11.5□□□□□ -0.57
VPS53-218ENST00000575207 ZNF554Q86TJ5 538 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 PDPNQ86YL7 162 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 DRAXINQ8NBI3 349 aaPredicted RBP11.5□□□□□ -0.57
VPS53-218ENST00000575207 ZNRF2Q8NHG8 242 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 PELI1Q96FA3 418 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 TMBIM4Q9HC24 238 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 UFC1Q9Y3C8 167 aa11.5□□□□□ -0.57
VPS53-218ENST00000575207 A0A1W2PQL4 384 aaPredicted RBP11.49□□□□□ -0.57
VPS53-218ENST00000575207 MCRIP1C9JLW8 97 aa11.49□□□□□ -0.57
VPS53-218ENST00000575207 CDRT1O95170 752 aa11.49□□□□□ -0.57
VPS53-218ENST00000575207 IGLV2-23P01705 113 aa11.49□□□□□ -0.57
VPS53-218ENST00000575207 COX4I1P13073 169 aa11.49□□□□□ -0.57
VPS53-218ENST00000575207 OR5D14Q8NGL3 314 aa11.49□□□□□ -0.57
VPS53-218ENST00000575207 OR2G2Q8NGZ5 317 aa11.49□□□□□ -0.57
VPS53-218ENST00000575207 F8W735 103 aaPredicted RBP11.48□□□□□ -0.57
VPS53-218ENST00000575207 MRPS14O60783 128 aaKnown RBP11.48□□□□□ -0.57
VPS53-218ENST00000575207 GIG44P09565 113 aaPredicted RBP11.48□□□□□ -0.57
VPS53-218ENST00000575207 OSMP13725 252 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 ATP6V1B2P21281 511 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 ICAM4Q14773 271 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 OR2T5Q6IEZ7 315 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 FAM220AQ7Z4H9 259 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 BCDIN3DQ7Z5W3 292 aaKnown RBP11.48□□□□□ -0.57
VPS53-218ENST00000575207 OR2T29Q8NH02 315 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 GIPC3Q8TF64 312 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 GALMQ96C23 342 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 ABHD14BQ96IU4 210 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 SPACA1Q9HBV2 294 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 IL36GQ9NZH8 169 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 FRRS1LQ9P0K9 344 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 STEAP1Q9UHE8 339 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 GNG8Q9UK08 70 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 TMED3Q9Y3Q3 217 aa11.48□□□□□ -0.57
VPS53-218ENST00000575207 CA11O75493 328 aa11.47□□□□□ -0.57
VPS53-218ENST00000575207 APOA2P02652 100 aa11.47□□□□□ -0.57
VPS53-218ENST00000575207 ZNF529Q6P280 563 aa11.47□□□□□ -0.57
VPS53-218ENST00000575207 ZNF383Q8NA42 475 aa11.47□□□□□ -0.57
VPS53-218ENST00000575207 SRSF12Q8WXF0 261 aaKnown RBP11.47□□□□□ -0.57
VPS53-218ENST00000575207 METTL9Q9H1A3 318 aa11.47□□□□□ -0.57
VPS53-218ENST00000575207 A0A1B0GW64 132 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 GSTT2P0CG29 244 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 GSTT2BP0CG30 244 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 SERPINA2P20848 420 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 RPS27AP62979 156 aaKnown RBP11.46□□□□□ -0.57
VPS53-218ENST00000575207 TNXAQ16473 311 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 TMEM41BQ5BJD5 291 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 CDPF1Q6NVV7 123 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 TTC9CQ8N5M4 171 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 H2AFY2Q9P0M6 372 aaPredicted RBP11.46□□□□□ -0.57
VPS53-218ENST00000575207 S4R3C0 116 aa11.46□□□□□ -0.57
VPS53-218ENST00000575207 PRKYO43930 277 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 OR2T7P0C7T2 308 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 KRTAP10-1P60331 282 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 TP53I3Q53FA7 332 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 ZNF66Q6ZN08 573 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 C15orf53Q8NAA6 179 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 DEFB104AQ8WTQ1 72 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 GMPPBQ9Y5P6 360 aa11.45□□□□□ -0.58
VPS53-218ENST00000575207 GPX5O75715 221 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 SC5DO75845 299 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 CTSDP07339 412 aaPredicted RBP11.44□□□□□ -0.58
VPS53-218ENST00000575207 PSMB6P28072 239 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 NANOS3P60323 173 aaKnown RBP11.44□□□□□ -0.58
VPS53-218ENST00000575207 GK3PQ14409 553 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 RAB12Q6IQ22 244 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 OR10H4Q8NGA5 316 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 AGMATQ9BSE5 352 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 JAM3Q9BX67 310 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 SLC2A9Q9NRM0 540 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 LRRC42Q9Y546 428 aa11.44□□□□□ -0.58
VPS53-218ENST00000575207 PROP1O75360 226 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 HSD17B1P14061 328 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 RAB3AP20336 220 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 CAPGP40121 348 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 NXNL2Q5VZ03 156 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 SLC25A42Q86VD7 318 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 PARP16Q8N5Y8 322 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms