RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 VENTXO95231 258 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 APOA2P02652 100 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 SNRNP70P08621 437 aaKnown RBP13.71□□□□□ -0.21
NUP88-210ENST00000574867 PGAM2P15259 253 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 RAB13P51153 203 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 ZNF383Q8NA42 475 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 IGHV3-72A0A0B4J1Y9 119 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 IGKV1D-33P01593 117 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 IGKV1-33P01594 117 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 CATR1Q13166 79 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 EIF4EBP1Q13541 118 aaPredicted RBP13.71□□□□□ -0.21
NUP88-210ENST00000574867 EBI3Q14213 229 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 KCTD9Q7L273 389 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 OR2T10Q8NGZ9 312 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 ZFAND1Q8TCF1 268 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 WASHC3Q9Y3C0 194 aa13.71□□□□□ -0.21
NUP88-210ENST00000574867 NIPBLQ6KC79 2804 aaeCLIP13.7□□□□□ -0.22
NUP88-210ENST00000574867 A6NDX4 124 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 RNASE1P07998 156 aaKnown RBP13.7□□□□□ -0.22
NUP88-210ENST00000574867 HES1Q14469 280 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 GLDNQ6ZMI3 551 aaPredicted RBP13.7□□□□□ -0.22
NUP88-210ENST00000574867 PDPNQ86YL7 162 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 OR13C8Q8NGS7 320 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 SCGB3A2Q96PL1 93 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 RAB18Q9NP72 206 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 PRELID3BQ9Y3B1 194 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 LINC00854A0A1B0GVQ3 168 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 RNF212BA8MTL3 300 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 MOSP00540 346 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 RRASP10301 218 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 CD24P25063 80 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 UBA52P62987 128 aaKnown RBP13.7□□□□□ -0.22
NUP88-210ENST00000574867 CBX3Q13185 183 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 LY6EQ16553 131 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 RTL8BQ17RB0 113 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 C16orf82Q7Z2V1 217 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 MARCH1Q8TCQ1 289 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 DDB2Q92466 427 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 MRGPRFQ96AM1 343 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 CHIAQ9BZP6 476 aa13.7□□□□□ -0.22
NUP88-210ENST00000574867 LINC00473A8K010 186 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 H7C2Y5 167 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 TRIM77I1YAP6 450 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 TMEM11P17152 192 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 RPL15P61313 204 aaKnown RBP13.69□□□□□ -0.22
NUP88-210ENST00000574867 ABCA11PQ4W5N1 156 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 TCTEX1D2Q8WW35 142 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 EAF1Q96JC9 268 aaPredicted RBP13.69□□□□□ -0.22
NUP88-210ENST00000574867 DUX5Q96PT3 197 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 SLC25A21Q9BQT8 299 aaPredicted RBP13.69□□□□□ -0.22
NUP88-210ENST00000574867 SLC2A9Q9NRM0 540 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 TNFRSF19Q9NS68 423 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 SLC35D1Q9NTN3 355 aa13.69□□□□□ -0.22
NUP88-210ENST00000574867 C14orf166Q9Y224 244 aaKnown RBP13.69□□□□□ -0.22
NUP88-210ENST00000574867 LYRM1O43325 122 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 TNFSF12O43508 249 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 CTSDP07339 412 aaPredicted RBP13.68□□□□□ -0.22
NUP88-210ENST00000574867 KIR2DS2P43631 304 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 RND3P61587 244 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 PLA2G10O15496 165 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 OR2F2O95006 317 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 RBMS2Q15434 407 aaKnown RBP13.68□□□□□ -0.22
NUP88-210ENST00000574867 PHLDA2Q53GA4 152 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 DHRS7BQ6IAN0 325 aaPredicted RBP13.68□□□□□ -0.22
NUP88-210ENST00000574867 Q8N6K4 173 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 CCDC71LQ8N9Z2 235 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 OR8H1Q8NGG4 311 aa13.68□□□□□ -0.22
NUP88-210ENST00000574867 PGLYRP1O75594 196 aaPredicted RBP13.67□□□□□ -0.22
NUP88-210ENST00000574867 RLN1P04808 185 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 LINC00205P59089 165 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 RPL30P62888 115 aaKnown RBP13.67□□□□□ -0.22
NUP88-210ENST00000574867 ASAH1Q13510 395 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 C16orf87Q6PH81 154 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 CCBE1Q6UXH8 406 aaPredicted RBP13.67□□□□□ -0.22
NUP88-210ENST00000574867 TMEM219Q86XT9 240 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 OR4C13Q8NGP0 309 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 ZFAND2BQ8WV99 257 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 RBM14Q96PK6 669 aaKnown RBP13.67□□□□□ -0.22
NUP88-210ENST00000574867 RNF5Q99942 180 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 SLC25A33Q9BSK2 321 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 LIN7CQ9NUP9 197 aaKnown RBP13.67□□□□□ -0.22
NUP88-210ENST00000574867 GPR132Q9UNW8 380 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 GPR137BO60478 399 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 BTCP35070 178 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 TCTEX1D1Q8N7M0 179 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 POC5Q8NA72 575 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 OR51H1Q8NH63 302 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 OR4S2Q8NH73 311 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 COPZ2Q9P299 210 aa13.67□□□□□ -0.22
NUP88-210ENST00000574867 SETD2Q9BYW2 2564 aaPredicted RBP13.66□□□□□ -0.22
NUP88-210ENST00000574867 RBFOX2O43251 390 aaKnown RBP eCLIP13.66□□□□□ -0.22
NUP88-210ENST00000574867 PI3P19957 117 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 PIGPP57054 158 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 FBLN7Q53RD9 439 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 MZT2BQ6NZ67 158 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 CD300LFQ8TDQ1 290 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 FLYWCH2Q96CP2 140 aaKnown RBP13.66□□□□□ -0.22
NUP88-210ENST00000574867 GPHA2Q96T91 129 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 TBC1D24Q9ULP9 559 aa13.66□□□□□ -0.22
NUP88-210ENST00000574867 MOB4Q9Y3A3 225 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms