RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 FAM162BQ5T6X4 162 aa2.54□□□□□ -2
NUP88-209ENST00000574855 TSPO2Q5TGU0 170 aa2.54□□□□□ -2
NUP88-209ENST00000574855 LEMD1Q68G75 181 aa2.54□□□□□ -2
NUP88-209ENST00000574855 NCBP2-AS2Q69YL0 99 aa2.54□□□□□ -2
NUP88-209ENST00000574855 UGT2A3Q6UWM9 527 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ZNF620Q6ZNG0 422 aa2.54□□□□□ -2
NUP88-209ENST00000574855 GDPGP1Q6ZNW5 385 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ZNF550Q7Z398 422 aa2.54□□□□□ -2
NUP88-209ENST00000574855 C6orf120Q7Z4R8 191 aa2.54□□□□□ -2
NUP88-209ENST00000574855 C17orf82Q86X59 251 aaPredicted RBP2.54□□□□□ -2
NUP88-209ENST00000574855 TGIF2LYQ8IUE0 185 aa2.54□□□□□ -2
NUP88-209ENST00000574855 UMODL1-AS1Q8N2C9 162 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ZCCHC24Q8N2G6 241 aaKnown RBP2.54□□□□□ -2
NUP88-209ENST00000574855 LINC00612Q8N6U2 182 aa2.54□□□□□ -2
NUP88-209ENST00000574855 SLC35G3Q8N808 338 aa2.54□□□□□ -2
NUP88-209ENST00000574855 GPR26Q8NDV2 337 aa2.54□□□□□ -2
NUP88-209ENST00000574855 OR2T4Q8NH00 348 aa2.54□□□□□ -2
NUP88-209ENST00000574855 OR4K15Q8NH41 348 aa2.54□□□□□ -2
NUP88-209ENST00000574855 GHSRQ92847 366 aa2.54□□□□□ -2
NUP88-209ENST00000574855 TCEAL3Q969E4 200 aa2.54□□□□□ -2
NUP88-209ENST00000574855 SPACA5Q96QH8 159 aa2.54□□□□□ -2
NUP88-209ENST00000574855 OR52E6Q96RD3 313 aa2.54□□□□□ -2
NUP88-209ENST00000574855 PEBP4Q96S96 227 aa2.54□□□□□ -2
NUP88-209ENST00000574855 HIST1H4GQ99525 98 aa2.54□□□□□ -2
NUP88-209ENST00000574855 GPER1Q99527 375 aa2.54□□□□□ -2
NUP88-209ENST00000574855 EFCAB11Q9BUY7 163 aa2.54□□□□□ -2
NUP88-209ENST00000574855 GGACTQ9BVM4 153 aa2.54□□□□□ -2
NUP88-209ENST00000574855 POMKQ9H5K3 350 aa2.54□□□□□ -2
NUP88-209ENST00000574855 MOB1AQ9H8S9 216 aa2.54□□□□□ -2
NUP88-209ENST00000574855 PRR34Q9NV39 138 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ZNF226Q9NYT6 803 aa2.54□□□□□ -2
NUP88-209ENST00000574855 PRNDQ9UKY0 176 aa2.54□□□□□ -2
NUP88-209ENST00000574855 HES2Q9Y543 173 aa2.54□□□□□ -2
NUP88-209ENST00000574855 ZNF106Q9H2Y7 1883 aaKnown RBP2.54□□□□□ -2
NUP88-209ENST00000574855 DOCK5Q9H7D0 1870 aa2.54□□□□□ -2
NUP88-209ENST00000574855 DYSFO75923 2080 aa2.53□□□□□ -2
NUP88-209ENST00000574855 DOCK6Q96HP0 2047 aa2.53□□□□□ -2
NUP88-209ENST00000574855 IGHV3OR16-13A0A075B7E8 117 aa2.53□□□□□ -2
NUP88-209ENST00000574855 A0A087WX48 190 aa2.53□□□□□ -2
NUP88-209ENST00000574855 TRAV8-6A0A0B4J262 113 aa2.53□□□□□ -2
NUP88-209ENST00000574855 A0A0G2JND7 137 aa2.53□□□□□ -2
NUP88-209ENST00000574855 C9orf170A2RU37 121 aa2.53□□□□□ -2
NUP88-209ENST00000574855 OR5H1A6NKK0 313 aa2.53□□□□□ -2
NUP88-209ENST00000574855 FAM220BPB1ANY3 271 aa2.53□□□□□ -2
NUP88-209ENST00000574855 D6RAR5 112 aa2.53□□□□□ -2
NUP88-209ENST00000574855 CYB5BO43169 146 aa2.53□□□□□ -2
NUP88-209ENST00000574855 NDUFS5O43920 106 aa2.53□□□□□ -2
NUP88-209ENST00000574855 SERPINB7O75635 380 aa2.53□□□□□ -2
NUP88-209ENST00000574855 DHRS3O75911 302 aa2.53□□□□□ -2
NUP88-209ENST00000574855 IFNA10P01566 189 aa2.53□□□□□ -2
NUP88-209ENST00000574855 SERPINE1P05121 402 aa2.53□□□□□ -2
NUP88-209ENST00000574855 SMIM6P0DI80 62 aa2.53□□□□□ -2
NUP88-209ENST00000574855 IGLL1P15814 213 aa2.53□□□□□ -2
NUP88-209ENST00000574855 IGHV1-2P23083 117 aa2.53□□□□□ -2
NUP88-209ENST00000574855 CD70P32970 193 aa2.53□□□□□ -2
NUP88-209ENST00000574855 CD200P41217 278 aa2.53□□□□□ -2
NUP88-209ENST00000574855 VDAC2P45880 294 aaPredicted RBP2.53□□□□□ -2
NUP88-209ENST00000574855 SERPINB10P48595 397 aa2.53□□□□□ -2
NUP88-209ENST00000574855 H2BFSP57053 126 aa2.53□□□□□ -2
NUP88-209ENST00000574855 NCALDP61601 193 aa2.53□□□□□ -2
NUP88-209ENST00000574855 GNG5P63218 68 aa2.53□□□□□ -2
NUP88-209ENST00000574855 RPS21P63220 83 aaKnown RBP2.53□□□□□ -2
NUP88-209ENST00000574855 FZD2Q14332 565 aa2.53□□□□□ -2
NUP88-209ENST00000574855 QPRTQ15274 297 aa2.53□□□□□ -2
NUP88-209ENST00000574855 IAH1Q2TAA2 248 aaPredicted RBP2.53□□□□□ -2
NUP88-209ENST00000574855 TMEM236Q5W0B7 351 aa2.53□□□□□ -2
NUP88-209ENST00000574855 UNQ9370/PRO34162Q6UXP9 181 aa2.53□□□□□ -2
NUP88-209ENST00000574855 CLEC20AQ6ZU45 233 aa2.53□□□□□ -2
NUP88-209ENST00000574855 LRRC28Q86X40 367 aaPredicted RBP2.53□□□□□ -2
NUP88-209ENST00000574855 FAM24BQ8N5W8 94 aa2.53□□□□□ -2
NUP88-209ENST00000574855 POM121L12Q8N7R1 296 aa2.53□□□□□ -2
NUP88-209ENST00000574855 AQP11Q8NBQ7 271 aa2.53□□□□□ -2
NUP88-209ENST00000574855 BEST4Q8NFU0 473 aa2.53□□□□□ -2
NUP88-209ENST00000574855 OR4D11Q8NGI4 311 aa2.53□□□□□ -2
NUP88-209ENST00000574855 OR10G4Q8NGN3 311 aa2.53□□□□□ -2
NUP88-209ENST00000574855 OR9G1Q8NH87 305 aa2.53□□□□□ -2
NUP88-209ENST00000574855 C10orf82Q8WW14 230 aa2.53□□□□□ -2
NUP88-209ENST00000574855 CCL17Q92583 94 aa2.53□□□□□ -2
NUP88-209ENST00000574855 APOBEC3DQ96AK3 386 aaPredicted RBP2.53□□□□□ -2
NUP88-209ENST00000574855 FAM3DQ96BQ1 224 aa2.53□□□□□ -2
NUP88-209ENST00000574855 ACY3Q96HD9 319 aa2.53□□□□□ -2
NUP88-209ENST00000574855 OR2M4Q96R27 311 aa2.53□□□□□ -2
NUP88-209ENST00000574855 KLF6Q99612 283 aaPredicted RBP2.53□□□□□ -2
NUP88-209ENST00000574855 GNB1LQ9BYB4 327 aa2.53□□□□□ -2
NUP88-209ENST00000574855 ULBP3Q9BZM4 244 aa2.53□□□□□ -2
NUP88-209ENST00000574855 PLSCR3Q9NRY6 295 aa2.53□□□□□ -2
NUP88-209ENST00000574855 RBFOX1Q9NWB1 397 aaKnown RBP2.53□□□□□ -2
NUP88-209ENST00000574855 GLS2Q9UI32 602 aa2.53□□□□□ -2
NUP88-209ENST00000574855 MIA3Q5JRA6 1907 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 COL11A1P12107 1806 aaPredicted RBP2.52□□□□□ -2.01
NUP88-209ENST00000574855 LOC285556D6RIA3 1793 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 hADV38S2A0JD32 116 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 MYBPHLA2RUH7 354 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 ARL5CA6NH57 179 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 FAM183AA6NL82 134 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 ZNF850A8MQ14 1090 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 A8MXK9 166 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 TRAPPC2LH3BP13 241 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 H3BP45 60 aa2.52□□□□□ -2.01
NUP88-209ENST00000574855 K7N7A8 449 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms