RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TRBV6-7A0A0A0MS04 114 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 DGCR2P98153 550 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 NDPQ00604 133 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 ZNF562Q6V9R5 426 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 PPP1R27Q86WC6 154 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 PDPNQ86YL7 162 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 CABLES2Q9BTV7 478 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 CENPOQ9BU64 300 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 OR2D2Q9H210 308 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 SLC35D1Q9NTN3 355 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 GAB2Q9UQC2 676 aa16.14■□□□□ 0.17
CLN3-219ENST00000565778 I3L521 148 aa16.13■□□□□ 0.17
CLN3-219ENST00000565778 EGR2P11161 476 aaPredicted RBP16.13■□□□□ 0.17
CLN3-219ENST00000565778 C9orf66Q5T8R8 295 aa16.13■□□□□ 0.17
CLN3-219ENST00000565778 ZNF773Q6PK81 442 aa16.13■□□□□ 0.17
CLN3-219ENST00000565778 FAM103A1Q9BTL3 118 aaKnown RBP16.13■□□□□ 0.17
CLN3-219ENST00000565778 OR51E2Q9H255 320 aa16.13■□□□□ 0.17
CLN3-219ENST00000565778 SDHAF2Q9NX18 166 aa16.13■□□□□ 0.17
CLN3-219ENST00000565778 DAPK2Q9UIK4 370 aa16.13■□□□□ 0.17
CLN3-219ENST00000565778 ELF5Q9UKW6 265 aaPredicted RBP16.13■□□□□ 0.17
CLN3-219ENST00000565778 FOXA2Q9Y261 457 aaPredicted RBP16.13■□□□□ 0.17
CLN3-219ENST00000565778 RRP15Q9Y3B9 282 aaKnown RBP16.13■□□□□ 0.17
CLN3-219ENST00000565778 DNAH3Q8TD57 4116 aa16.13■□□□□ 0.17
CLN3-219ENST00000565778 SEC14L6B5MCN3 397 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 DIRAS3O95661 229 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 SNRPBP14678 240 aaKnown RBP16.12■□□□□ 0.17
CLN3-219ENST00000565778 LUMP51884 338 aaPredicted RBP16.12■□□□□ 0.17
CLN3-219ENST00000565778 CRIP2P52943 208 aaPredicted RBP16.12■□□□□ 0.17
CLN3-219ENST00000565778 ZNF616Q08AN1 781 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 SRSF7Q16629 238 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLN3-219ENST00000565778 UNQ5815/PRO19632Q6UWF5 114 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 TCTEX1D1Q8N7M0 179 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 LFNGQ8NES3 379 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 CASTOR1Q8WTX7 329 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 ST6GALNAC5Q9BVH7 336 aa16.12■□□□□ 0.17
CLN3-219ENST00000565778 SLC25A17O43808 307 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 SOX15O60248 233 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 RAMP3O60896 148 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 CA2P00918 260 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 OR8U8P0C7N1 319 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 CD40LGP29965 261 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 RUNX1Q01196 453 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 CBX3Q13185 183 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 FHL3Q13643 280 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 AKIRIN2Q53H80 203 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 ACTBL2Q562R1 376 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 C19orf54Q5BKX5 351 aa16.11■□□□□ 0.17
CLN3-219ENST00000565778 IGKV1D-8A0A087WSZ0 117 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 SPDEFO95238 335 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 CNIH1O95406 144 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 SDC2P34741 201 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 LGALS7P47929 136 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 GNB1P62873 340 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 FXYD3Q14802 87 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 ZNF260Q3ZCT1 412 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 HACD4Q5VWC8 232 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 Q6ZS49 121 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 MS4A10Q96PG2 267 aa16.1■□□□□ 0.17
CLN3-219ENST00000565778 J3QRK9 145 aa16.09■□□□□ 0.17
CLN3-219ENST00000565778 DTYMKP23919 212 aa16.09■□□□□ 0.17
CLN3-219ENST00000565778 TAGLNQ01995 201 aaKnown RBP16.09■□□□□ 0.17
CLN3-219ENST00000565778 MXD1Q05195 221 aa16.09■□□□□ 0.17
CLN3-219ENST00000565778 PYHIN1Q6K0P9 492 aa16.09■□□□□ 0.17
CLN3-219ENST00000565778 SFXN4Q6P4A7 337 aa16.09■□□□□ 0.17
CLN3-219ENST00000565778 BVESQ8NE79 360 aa16.09■□□□□ 0.17
CLN3-219ENST00000565778 ALX4Q9H161 411 aaPredicted RBP16.09■□□□□ 0.17
CLN3-219ENST00000565778 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLN3-219ENST00000565778 TPSG1Q9NRR2 321 aa16.09■□□□□ 0.17
CLN3-219ENST00000565778 LOC100506127A0A0U1RQW1 187 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 SHOXO15266 292 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 SCGNO76038 276 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 CLEC2LP0C7M8 214 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 ECI1P42126 302 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 PITPNAQ00169 270 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 NEDD8Q15843 81 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 RTL8BQ17RB0 113 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 H1FOOQ8IZA3 346 aaPredicted RBP16.08■□□□□ 0.16
CLN3-219ENST00000565778 GRPEL2Q8TAA5 225 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 ARPC1AQ92747 370 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 HARBI1Q96MB7 349 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 ZNF355PQ9NSJ1 428 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 SCOCQ9UIL1 159 aa16.08■□□□□ 0.16
CLN3-219ENST00000565778 CTXN2P0C2S0 81 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 RRASP10301 218 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 CD36P16671 472 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 CD69Q07108 199 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 PJVKQ0ZLH3 352 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 DCTN2Q13561 401 aaKnown RBP16.07■□□□□ 0.16
CLN3-219ENST00000565778 ASPHD1Q5U4P2 390 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 LGALS14Q8TCE9 139 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 DCUN1D4Q92564 292 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 DCSTAMPQ9H295 470 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 RNF167Q9H6Y7 350 aa16.07■□□□□ 0.16
CLN3-219ENST00000565778 TMEM235A6NFC5 223 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 ARPC1BO15143 372 aaKnown RBP16.06■□□□□ 0.16
CLN3-219ENST00000565778 IGLV2-23P01705 113 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 IGHV3-11P01762 117 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 TPPP2P59282 170 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 GNG2P59768 71 aa16.06■□□□□ 0.16
CLN3-219ENST00000565778 IDNKQ5T6J7 187 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms