RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 A8MZ25 164 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 M0R1X1 148 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 APOA2P02652 100 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 UCHL1P09936 223 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 ZP3P21754 424 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 KLF5Q13887 457 aaPredicted RBP12.88□□□□□ -0.35
CLN3-211ENST00000564091 IL34Q6ZMJ4 242 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 FAM89BQ8N5H3 189 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 TMEM203Q969S6 136 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 ISOC1Q96CN7 298 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 ARHGAP5-AS1Q96IT6 56 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 GFI1Q99684 422 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 URM1Q9BTM9 101 aaKnown RBP12.88□□□□□ -0.35
CLN3-211ENST00000564091 MND1Q9BWT6 205 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 RDH8Q9NYR8 311 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 ADAM30Q9UKF2 790 aa12.88□□□□□ -0.35
CLN3-211ENST00000564091 PTGES3LE9PB15 166 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 EBAG9O00559 213 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 IGLV2-23P01705 113 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 CDK1P06493 297 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 VEGFCP49767 419 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 SYNJ2BPP57105 145 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 RCN1Q15293 331 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 SPHARQ15513 63 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 ADAMTSL5Q6ZMM2 481 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 OR9G4Q8NGQ1 327 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 CMSS1Q9BQ75 279 aaKnown RBP12.87□□□□□ -0.35
CLN3-211ENST00000564091 PLGRKTQ9HBL7 147 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 C12orf4Q9NQ89 552 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 SLC35D1Q9NTN3 355 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 HSF4Q9ULV5 492 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 MGAT4AQ9UM21 535 aa12.87□□□□□ -0.35
CLN3-211ENST00000564091 LSM2Q9Y333 95 aaKnown RBP12.87□□□□□ -0.35
CLN3-211ENST00000564091 AK6Q9Y3D8 172 aaKnown RBP12.87□□□□□ -0.35
CLN3-211ENST00000564091 A0A0G2JLM5 398 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 H3BUA1 57 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 TRBV12-3P01733 135 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 CD3GP09693 182 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 MED22Q15528 200 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 HAGHQ16775 308 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 LIPKQ5VXJ0 399 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 RNLSQ5VYX0 342 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 PECRQ9BY49 303 aa12.86□□□□□ -0.35
CLN3-211ENST00000564091 TRDCB7Z8K6 153 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 H0Y980 276 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 SLC17A2O00624 439 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 CRYGBP07316 175 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 APELAP0DMC3 54 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 CLDN12P56749 244 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 PLAC9Q5JTB6 97 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 SPATA25Q9BR10 227 aa12.85□□□□□ -0.35
CLN3-211ENST00000564091 SRRM4A7MD48 611 aaKnown RBP12.84□□□□□ -0.35
CLN3-211ENST00000564091 RBMXL2O75526 392 aaKnown RBP12.84□□□□□ -0.35
CLN3-211ENST00000564091 RAB11BQ15907 218 aa12.84□□□□□ -0.35
CLN3-211ENST00000564091 MOGAT2Q3SYC2 334 aa12.84□□□□□ -0.35
CLN3-211ENST00000564091 TMEM91Q6ZNR0 172 aa12.84□□□□□ -0.35
CLN3-211ENST00000564091 C5orf30Q96GV9 206 aa12.84□□□□□ -0.35
CLN3-211ENST00000564091 HARBI1Q96MB7 349 aa12.84□□□□□ -0.35
CLN3-211ENST00000564091 TINAGL1Q9GZM7 467 aaPredicted RBP12.84□□□□□ -0.35
CLN3-211ENST00000564091 TUBA4BQ9H853 241 aa12.84□□□□□ -0.35
CLN3-211ENST00000564091 SDHAF2Q9NX18 166 aa12.84□□□□□ -0.35
CLN3-211ENST00000564091 PEF1Q9UBV8 284 aaKnown RBP12.84□□□□□ -0.35
CLN3-211ENST00000564091 IZUMO1RA6ND01 250 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 BET1O15155 118 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 FABP7O15540 132 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 CSN3P07498 182 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 LGALS7P47929 136 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 PLA2G7Q13093 441 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 DYRK1AQ13627 763 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 IGSF11Q5DX21 431 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 OGFRL1Q5TC84 451 aaPredicted RBP12.83□□□□□ -0.36
CLN3-211ENST00000564091 ZNF343Q6P1L6 599 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.83□□□□□ -0.36
CLN3-211ENST00000564091 BVESQ8NE79 360 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 UFD1Q92890 307 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 TMEM68Q96MH6 324 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 THAP7Q9BT49 309 aaPredicted RBP12.83□□□□□ -0.36
CLN3-211ENST00000564091 OR2D2Q9H210 308 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 COA4Q9NYJ1 87 aa12.83□□□□□ -0.36
CLN3-211ENST00000564091 MSGN1A6NI15 193 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 SHOXO15266 292 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 GSTT2P0CG29 244 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 GSTT2BP0CG30 244 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 AADACP22760 399 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 RPS25P62851 125 aaKnown RBP12.82□□□□□ -0.36
CLN3-211ENST00000564091 IRF3Q14653 427 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 MRGPRG-AS1Q2M3A8 158 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 C2orf76Q3KRA6 126 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 OR56B1Q8NGI3 324 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 OR4A4PQ8NGN8 299 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 FAM3DQ96BQ1 224 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 KCNK7Q9Y2U2 307 aa12.82□□□□□ -0.36
CLN3-211ENST00000564091 BRI3O95415 125 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 HSMCR30P0CW71 290 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 SERPINB10P48595 397 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 TATDN3Q17R31 274 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 RPEL1Q2QD12 228 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 TMEM177Q53S58 311 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 GTSCR1Q86UQ5 136 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 MAFIPQ8WZ33 124 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms